Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n05
         (190 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   1.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   4.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    18   9.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    18   9.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    18   9.5  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 18  VSVVTXLCGVPPELN 62
           VS    LCG PP  N
Sbjct: 442 VSTTVILCGSPPSAN 456


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 153 RPSGDQDGGXRMQTLAKRNGTV 88
           +PS  + G  R   + KRNG++
Sbjct: 350 QPSTSECGEFRSVVVQKRNGSM 371


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/14 (35%), Positives = 7/14 (50%)
 Frame = -1

Query: 103 TQWDCIRPGTXWXW 62
           T W  +  G+ W W
Sbjct: 162 TNWVGVFGGSAWSW 175


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 102 VSRGSASVXRHLGRRWGXVAASYXMGV 182
           +SR SA   +  G     VAA   +GV
Sbjct: 130 LSRSSALASKATGYPLAYVAAKLALGV 156


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/14 (35%), Positives = 7/14 (50%)
 Frame = -1

Query: 103 TQWDCIRPGTXWXW 62
           T W  +  G+ W W
Sbjct: 162 TNWVGVFGGSAWSW 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,493
Number of Sequences: 438
Number of extensions: 665
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 42
effective length of database: 127,947
effective search space used:  2558940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)