Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4m23
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    72   3e-14
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    71   6e-14
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    67   8e-13
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   1.8  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   2.4  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.1  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    24   7.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   7.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   7.2  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    24   9.5  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 72.1 bits (169), Expect = 3e-14
 Identities = 29/51 (56%), Positives = 46/51 (90%)
 Frame = +2

Query: 2   AAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 154
           +A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG EKL+++P GG
Sbjct: 19  SASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 70.9 bits (166), Expect = 6e-14
 Identities = 30/51 (58%), Positives = 46/51 (90%)
 Frame = +2

Query: 2   AAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 154
           +A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG EKLS++P  G
Sbjct: 19  SASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 67.3 bits (157), Expect = 8e-13
 Identities = 27/51 (52%), Positives = 46/51 (90%)
 Frame = +2

Query: 2   AAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 154
           +A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG EKL+++P GG
Sbjct: 19  SASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGG 69


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 14   VEKILSSVGIEADAEKLKKVITELNG 91
            V++I   VG+E D+E  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 132 SFSRPAAISCSTSLPLSSVITFLSFSASASIPT 34
           SF  P+A +   S P+SS+ +F + SA+++ P+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPS 483


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 282 TKLYKSTRRWSLFQFMF 332
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 132 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAA 1
           SF+ PA+ S  TSL  SS     S SAS +  +   + S+S+A+
Sbjct: 70  SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS 113



 Score = 24.2 bits (50), Expect = 7.2
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = -3

Query: 84 SSVITFLSFSASASIPTELRIFSTSAAA 1
          SSV T LS SAS+SIP      S+SAAA
Sbjct: 8  SSVDTSLSSSASSSIPAS----SSSAAA 31


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 126 SRPAAISCSTSLPLSSVITFLSFSASASIPTEL 28
           S P+A+S +TS+P  S+ + +S S S S  T L
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL 169


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = -3

Query: 153 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAA 4
           PPTG   S S P         + STS+P+    T  + + S+ +PT     +TS +
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTS 234


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 286 NFTKVRGAGRYSSLCFKSNMMASVF 360
           NF  +RG GRY++    S+ +A+V+
Sbjct: 122 NFYNLRGDGRYNAYDPSSDSLANVY 146


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -3

Query: 102 STSLPLSSVITFLSFSASASIPTELRIFSTS 10
           S+ LP SSVI+  S S+S+ +PT + I STS
Sbjct: 226 SSFLP-SSVISSASLSSSSVLPTSI-ITSTS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 988,673
Number of Sequences: 5004
Number of extensions: 11499
Number of successful extensions: 50
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)