Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4m23
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    50   8e-07
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    50   8e-07
Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    27   4.7  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    27   4.7  
U40802-4|AAK19010.1|   80|Caenorhabditis elegans Hypothetical pr...    26   8.2  
AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical ...    26   8.2  

>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 49.6 bits (113), Expect = 8e-07
 Identities = 22/51 (43%), Positives = 33/51 (64%)
 Frame = +2

Query: 2   AAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 154
           +A DV K+L + G++ D E    V+  L GK + ++IA G+ KLSS+P GG
Sbjct: 19  SAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVKLSSVPSGG 69


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 49.6 bits (113), Expect = 8e-07
 Identities = 33/91 (36%), Positives = 41/91 (45%)
 Frame = +2

Query: 11  DVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXX 190
           D++ ILS+VG++ADAE  K V++ L GK VE+LIA G   L S  V GG           
Sbjct: 22  DLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVS--VSGGAAPAAAAAPAA 79

Query: 191 XXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 283
                                   MGFGLFD
Sbjct: 80  GGAAPAADSKPAKKEEPKEESDDDMGFGLFD 110


>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +2

Query: 32  SVGIEADAEKLKKVITELNGK---DVEQLI 112
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 297 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 326


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +2

Query: 32  SVGIEADAEKLKKVITELNGK---DVEQLI 112
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +2

Query: 32  SVGIEADAEKLKKVITELNGK---DVEQLI 112
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309


>U40802-4|AAK19010.1|   80|Caenorhabditis elegans Hypothetical
           protein ZC477.4 protein.
          Length = 80

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 120 PAAISCSTSLPLSSVITFLSFSASASIPTELRI 22
           P A S S+S   SS I   S S SAS+  ELR+
Sbjct: 11  PGASSSSSSSTASSQIRPPSLSLSASLSEELRV 43


>AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical
           protein Y51H1A.4 protein.
          Length = 490

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 17  EKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 157
           EK      +EAD   + ++I +   + VE L+ A +E+     VGGG
Sbjct: 101 EKTTFQCEMEADNSGVTEMIEKRYTQHVESLLTARKERKRRHRVGGG 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,525,759
Number of Sequences: 27780
Number of extensions: 64911
Number of successful extensions: 238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)