Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4m20
(177 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 26 0.57
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 0.76
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 26 0.76
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 1.8
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 3.1
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 23 4.1
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 23 5.4
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer... 23 5.4
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 23 5.4
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 22 9.4
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 22 9.4
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 26.2 bits (55), Expect = 0.57
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 33 SLPSSEIYRQLVDSRHVSSDSFGVY 107
+L S I+R + S HVSS S GVY
Sbjct: 2 TLLDSSIFRFRLSSLHVSSRSLGVY 26
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 0.76
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 97 KESEETWRESTNWR*ISEEG 38
KE E W + NW+ SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828
>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 25.8 bits (54), Expect = 0.76
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 54 YRQLVDSRHVSSDSFGVYVKS*SLILHSFGLLV 152
YRQLVD R ++ D F + K+ LH + V
Sbjct: 34 YRQLVDGRELTLDDFISHAKALRTHLHRLDINV 66
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 44 LRDLPPVGRFSPCFFRLLWSLRKILIPYSSQFW 142
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 90
Score = 23.8 bits (49), Expect = 3.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 33 SLPSSEIYRQLVDSRHVSSDSFGVYVKS*SLILHSFGLLVS 155
S P I+R L+ S H+S S V L++HS LVS
Sbjct: 6 SQPPCNIFRPLILSMHLSPVSILSPVLLIYLVIHSQNELVS 46
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 14 LCIYSSFSPFLRDLPPVGRFSPCFFRLLWSLRKILIPYSSQFWVVS 151
LC+ S+F P +R P+ F F + L I+ + ++ +++
Sbjct: 520 LCVTSAFMPAIRSPSPI-NFLSSMFIAFYKLMPIISKHLNELPIIA 564
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 143 PKTVKNKGLRFYVDSK 96
PK VKNK R YVD++
Sbjct: 557 PKLVKNKLGRVYVDTR 572
>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2
Query: 101 SKGVGRNMARIY 66
SKG+GRN+A Y
Sbjct: 129 SKGIGRNLANAY 140
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 14 LCIYSSFSPFLRDLPPVGRFSP 79
LC YS SP R+LP F P
Sbjct: 502 LCEYSEESPLYRELPCHHIFHP 523
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 22.2 bits (45), Expect = 9.4
Identities = 6/16 (37%), Positives = 13/16 (81%)
Frame = -1
Query: 123 GIKILRRLQRSRKKHG 76
G+++ RR+++ +KHG
Sbjct: 2271 GLEVTRRMRKIERKHG 2286
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 86 RNMARIYQLAVDLGGRERSL 27
RN+ R+Y+ VD G R L
Sbjct: 101 RNLLRLYETIVDAGVRSELL 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 689,976
Number of Sequences: 5004
Number of extensions: 10352
Number of successful extensions: 34
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -