Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4m20
         (177 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0302 - 2286171-2286341,2286747-2286968                           27   2.1  
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405...    25   6.5  
11_06_0160 - 20794974-20795977,20796241-20796295                       25   6.5  
02_04_0192 + 20795659-20796309                                         25   6.5  
06_02_0011 - 10569471-10572245                                         25   8.6  
01_01_0540 + 3957622-3960903                                           25   8.6  

>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 105 RLQRSRKKHGENLPTGGRSRRKGEKLE*MQREEQ 4
           RL+R RK +  ++   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>12_02_0786 +
           23139854-23139901,23140054-23140122,23140531-23140544,
           23140603-23140675,23140875-23140979,23141817-23142080,
           23142159-23142251,23142381-23142587,23143155-23143258,
           23143436-23143502,23143576-23143683,23143943-23144033,
           23144123-23144193,23144421-23144549,23144659-23144766
          Length = 516

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 17  CIYSSF-SPFLRDLPPVGRFSPCFFRLL 97
           C Y  + S   R  PP GRFSP   ++L
Sbjct: 361 CEYHGYLSDLTRTWPPCGRFSPAQVKML 388


>11_06_0160 - 20794974-20795977,20796241-20796295
          Length = 352

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 123 GIKILRRLQRSRKKHGENLPTGGRSRR 43
           G  +LRR + SR++HG  L  G  +R+
Sbjct: 166 GGALLRRAESSRRQHGRALREGREARQ 192


>02_04_0192 + 20795659-20796309
          Length = 216

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 26  SSFSPFLRDLPPVGRFSPCFFRLLWS-LRKILIPYS 130
           SS SPF+  LPP    SP F R L S LR   +P+S
Sbjct: 47  SSSSPFVSFLPPPTSPSP-FHRFLPSPLRASSVPFS 81


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 86  FRLLWSLRKILI 121
           F+LLWSLRK LI
Sbjct: 15  FKLLWSLRKYLI 26


>01_01_0540 + 3957622-3960903
          Length = 1093

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 14 LCIYSSFSPFLRDLPPVG 67
          L + SSF PF RD  P+G
Sbjct: 17 LAVVSSFDPFHRDANPMG 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,535,590
Number of Sequences: 37544
Number of extensions: 68717
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 38
effective length of database: 13,366,676
effective search space used: 267333520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)