Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4m18
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 72 7e-14
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 71 2e-13
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 70 3e-13
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 69 5e-13
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S... 60 3e-10
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 58 1e-09
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 57 2e-09
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 56 5e-09
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 55 9e-09
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 54 2e-08
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po... 54 2e-08
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 52 8e-08
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 52 1e-07
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 40 4e-04
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 34 0.018
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 33 0.032
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 31 0.17
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 27 2.7
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 27 2.7
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 27 3.6
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 4.8
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 26 4.8
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 26 4.8
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 26 6.3
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 26 6.3
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 8.4
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 72.1 bits (169), Expect = 7e-14
Identities = 38/146 (26%), Positives = 77/146 (52%), Gaps = 2/146 (1%)
Frame = +2
Query: 182 LKGKVAIVTASTEGIGYAIAKRLGHEGASV-VISSRKEDNVENAVKSLRSDGITVEGIVC 358
LKGK ++T + GIG++IAK G++V ++ R + +E A + G+ + C
Sbjct: 7 LKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAELRDKHGVQAKAYSC 66
Query: 359 HVANSDHRKKLFEVAKSKFGG-LDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWL 535
+ N + A + GG LD++++NA + + + +E +W K+ IN+ ++
Sbjct: 67 PIENRSAVIETTNQAVEELGGRLDVMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYY 126
Query: 536 LAKEAYPELIKRGGGNIVFISSIAAY 613
A+ A K+G G+++F +S++ +
Sbjct: 127 TAQAAGHHFKKQGKGSLIFTASMSGH 152
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 70.5 bits (165), Expect = 2e-13
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 5/174 (2%)
Frame = +2
Query: 179 RLKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVC 358
+L K ++T GIG A A EG+ +VIS E+ + V D I EG C
Sbjct: 39 KLAEKKTLLTGGDSGIGKAAAVMFAREGSDLVISCLPEERDDAEVTR---DLIEREGRNC 95
Query: 359 HV-----ANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVK 523
+ SD+ + L + A K G +D+LV+N A I + D++ WD F+ N+
Sbjct: 96 WIWEGKLDKSDNCRDLVDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIF 155
Query: 524 SSWLLAKEAYPELIKRGGGNIVFISSIAAYQPMEPLGAYSVSKTTLLGLTKSNS 685
S + + K A + + G +IV SSI AY L Y+ +K + T+ S
Sbjct: 156 SFFWVTKAAISHM--KSGSSIVNCSSINAYVGRPDLLDYTSTKGAITAFTRGLS 207
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 70.1 bits (164), Expect = 3e-13
Identities = 50/157 (31%), Positives = 74/157 (47%)
Frame = +2
Query: 191 KVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVAN 370
KV ++T S++GIG A A+ L + + +S +E + + V+G V V
Sbjct: 7 KVILLTGSSKGIGLATAEALQKKAKVIAVSRSLTPELETLLIQNPDSFVHVKGDVTEVG- 65
Query: 371 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKEA 550
K E A KFG LD ++ NA V ++ I + D W K+F+IN S K A
Sbjct: 66 ----KASIETAIKKFGKLDSVILNAGVLEPIAKIADADINEWRKLFDINFFSVVETVKYA 121
Query: 551 YPELIKRGGGNIVFISSIAAYQPMEPLGAYSVSKTTL 661
P L ++ G IV +SS AA + AY SK +
Sbjct: 122 IPHL-RKTKGTIVIVSSGAAVRVFPAWAAYCCSKAAI 157
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 69.3 bits (162), Expect = 5e-13
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = +2
Query: 182 LKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCH 361
LKGK +V + +GIG++IA G +V+I+ D E A K G+ V +
Sbjct: 19 LKGKNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKKLAEETGVQVHTLKID 78
Query: 362 VANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLA 541
++ SD + E + F + ++V+NA + P +L++ ++K+ IN S + +A
Sbjct: 79 ISRSDTVEAGVEEIQKIFKEIHVVVANAGM-PFRRSVLDSPPHEFEKVMNINTNSVYRVA 137
Query: 542 KEAYPELIKRGGGNIVFISSIAAYQPMEP--LGAYSVSKTTLLGLTKS 679
K+G GN++ +S++A P + AY SK + L K+
Sbjct: 138 YYMGKIFKKQGFGNLIATASMSATIVNAPQHIAAYCASKAAVRQLCKA 185
>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 60.1 bits (139), Expect = 3e-10
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 2/165 (1%)
Frame = +2
Query: 191 KVAIVTASTEG-IGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVA 367
K ++T +EG IG A+A + EG V+ ++R+ + ++N K+ ++ + V
Sbjct: 5 KFVLITGCSEGGIGNALALKFHQEGFQVLATARQVERMDNLTKA------GLQTLKLDVT 58
Query: 368 NSDHRKKLF-EVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAK 544
+ D +++ EV K G L L++NA P +P ++ D + K+ ++N + K
Sbjct: 59 DEDSVREVEQEVRKFTNGSLHYLINNAGA-PCSAPAIDLDIEDVSKVMDVNFYGVIRMNK 117
Query: 545 EAYPELIKRGGGNIVFISSIAAYQPMEPLGAYSVSKTTLLGLTKS 679
+LI R G IV ++S+ +Y P AY+ SK LL + +
Sbjct: 118 AFQHQLI-RAKGTIVNVNSLVSYVPFAFNAAYNASKAALLAYSNT 161
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 58.4 bits (135), Expect = 1e-09
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 4/164 (2%)
Frame = +2
Query: 200 IVTASTEGIGYAIAKRLGHEGASVVISSRKEDNV---ENAVKSLRSDGITVEGIVCHVAN 370
++T S++G+GYA+ K +G +V+ SR D + + + L+ D V+ +
Sbjct: 9 LITGSSKGLGYALVKVGLAQGYNVIACSRAPDTITIEHSKLLKLKLDVTDVKSV------ 62
Query: 371 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKEA 550
+ F+ AK +FG +DI+++NA V + + + +N + KEA
Sbjct: 63 ----ETAFKDAKRRFGNVDIVINNAGYG-LVGEFESYNIEEMHRQMNVNFWGVAYITKEA 117
Query: 551 YPELIKRG-GGNIVFISSIAAYQPMEPLGAYSVSKTTLLGLTKS 679
+ + G GG I+ ISS+A Y P L Y+ SK + GL+++
Sbjct: 118 LNLMRESGKGGRILQISSVAGYYPSPCLSMYNASKFAVEGLSQT 161
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 57.2 bits (132), Expect = 2e-09
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 1/164 (0%)
Frame = +2
Query: 191 KVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVAN 370
K+ + GIG ++ K L + +VV +S ++ ++ V I V++
Sbjct: 6 KIYFIAGGNRGIGLSLVKELSNRKGTVVFASARKPGAATKLQEWSKSHSNVHIIKLDVSS 65
Query: 371 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKEA 550
+ + + +D+L N+AV + P++ T + VW+ ++ NV + +
Sbjct: 66 LESANEAAQEVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNSHYKTNVLGPIHVYQAF 125
Query: 551 YPELIKRGGGN-IVFISSIAAYQPMEPLGAYSVSKTTLLGLTKS 679
YP LIK+G IVF SS+A +GA+ S + G +K+
Sbjct: 126 YP-LIKKGRSKIIVFTSSLAG-----SMGAFFPSSQSAYGQSKA 163
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 56.0 bits (129), Expect = 5e-09
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 2/168 (1%)
Frame = +2
Query: 182 LKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCH 361
LKGK A+V GIG+AI GA+ I + A + +++G+ C
Sbjct: 19 LKGKNAVVFGGARGIGHAICSVFAEAGANAFIVYNTTPGEKAAKEIAQANGVKTYTCKCD 78
Query: 362 VANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLA 541
V + F + F +DI+V N + S I T E+ ++I +N+ + +A
Sbjct: 79 VTIPKEVEHAFAEIQKVFDTIDIVVPNNGICTGKSAIDMTYEEFANEI-NVNLLGVFNVA 137
Query: 542 KEAYPELIKRGGGNIVFISSIAAYQPMEPLG--AYSVSKTTLLGLTKS 679
A P K+G G++V +S++ P AY+ SK ++ L KS
Sbjct: 138 HNAGPIFQKQGHGSLVATASMSGVVVNVPQQQCAYNTSKAGVIQLIKS 185
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 55.2 bits (127), Expect = 9e-09
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = +2
Query: 182 LKGKVAIVTASTEGIGYAIAKRLGHEGASVV-ISSRKEDNVENAVKSLRSDGITVEGIVC 358
++G+V ++T + GIG + K G V I V++A +L++D
Sbjct: 3 VEGRVVLITGAAGGIGKVLCKMFTELGDRVAGIDIVDPSKVQDAALALQAD--------- 53
Query: 359 HVANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLL 538
V+ +D + E G +D+L++NA + +P + + WD + ++ ++L
Sbjct: 54 -VSKADQIETAIEKVIQTLGPIDVLINNAGLADD-TPFEQLSHESWDHDVSLVLRGNYLT 111
Query: 539 AKEAYPELIKRG-GGNIVFISSIAAYQPMEPLGAYSVSKTTLLGLTKS 679
+ P + K+G GG+IV I S+ + + AYS +K L LTK+
Sbjct: 112 QRYVIPHMAKQGKGGSIVNIGSVNGHIYLGS-PAYSAAKAGLENLTKA 158
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 54.0 bits (124), Expect = 2e-08
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Frame = +2
Query: 191 KVAIVTASTEGIGYAIAKRLG-HEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVA 367
KV + GIG ++ K L EG +V S+RK + + +S V+ + V
Sbjct: 6 KVYFIAGGNRGIGLSLVKELSSREGTTVFASARKPEAATELQEWSKSHP-NVKTVELDVT 64
Query: 368 NSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKE 547
+ + + G+D+L N+ + + ++E E+VW+ ++ NV + K
Sbjct: 65 SQQSANEAAQSVAKAVDGIDVLWLNSGICQSYYTVMEAPEEVWNAHYQTNVLGPIHVFKA 124
Query: 548 AYPELIKRGGGNIVFISS 601
YP L K+ ++F SS
Sbjct: 125 FYPLLTKKKTRQVIFTSS 142
>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 54.0 bits (124), Expect = 2e-08
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 5/162 (3%)
Frame = +2
Query: 191 KVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVAN 370
K+ + GIG ++ K L + +VV +S ++ ++ V I +++
Sbjct: 6 KIYFIAGGNRGIGLSLVKELSNREGTVVFASARKPEAATELQEWSKSHSNVHIIKLDISS 65
Query: 371 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKEA 550
+ + + G +D+L N+ + + + +L T + VW+ ++ NV + +
Sbjct: 66 LESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLNTPDDVWNSHYKTNVLGPIHVYQAF 125
Query: 551 YPELIKRGGGNIV-----FISSIAAYQPMEPLGAYSVSKTTL 661
YP L+K+G I+ + S+ A+ P G Y SK L
Sbjct: 126 YP-LVKKGESKIIVFTSSLVGSMGAFFPFNQSG-YGQSKAAL 165
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 52.0 bits (119), Expect = 8e-08
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Frame = +2
Query: 188 GKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVA 367
G V ++ GIG ++ K L ++ V +S + + +K V I V
Sbjct: 6 GIVYVIVGGNRGIGLSLVKELSNKEGVTVFASARGPGSASELKDWSKTHSNVHIIKLDVT 65
Query: 368 NSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKE 547
+ K + +D+L N+ ++ + P+L+T +++W ++ NV + +
Sbjct: 66 SLRSAKDAAMQVEKVVKCIDVLWVNSGISKSFQPVLKTSDELWMSHYQTNVLGP-IHVYQ 124
Query: 548 AYPELIKRGG-GNIVFISSIAAYQ-PMEP--LGAYSVSKTTL 661
A+ L+K G NIVF SS+AA + P AY SK L
Sbjct: 125 AFYHLLKEGKLKNIVFTSSMAACMGGVRPNTYSAYGQSKAAL 166
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 51.6 bits (118), Expect = 1e-07
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 9/154 (5%)
Frame = +2
Query: 182 LKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCH 361
L GKVA+VT S+ GIGY A L +GA V ++ R E+ + +K + D + I
Sbjct: 40 LTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIH-DEVRHSKIRFL 98
Query: 362 VANSDHRKKLFEVAKS---KFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSW 532
+ + +++ A+S K L ILV+NA + ++P E + ++ + N S +
Sbjct: 99 RLDLLDFESVYQAAESFIAKEEKLHILVNNAGI---MNPPFELTKDGYELQIQTNYLSHY 155
Query: 533 LLAKEAYPEL------IKRGGGNIVFISSIAAYQ 616
L + P L + G IV ++SIA Q
Sbjct: 156 LFTELLLPTLRRTAEECRPGDVRIVHVASIAYLQ 189
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 39.9 bits (89), Expect = 4e-04
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 13/172 (7%)
Frame = +2
Query: 185 KGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHV 364
KG A+VT +T+GIG A +L G +VV+ SR ++ ++ K L TV +
Sbjct: 56 KGYWAVVTGATDGIGKEYATQLAMSGFNVVLISRTQEKLDALAKELE----TVAKVKTRT 111
Query: 365 ANSDHRK---KLFEVAKSKFGG--LDILVSNAAVNPTV-SPILETDEQVWDKIFEINVKS 526
D+ K + FE G + +L++N + + + ET + D I IN
Sbjct: 112 IAIDYTKTTAETFEKLHQDLVGTPITVLINNVGQSHYMPTSFAETTVKEMDDIMHINCFG 171
Query: 527 SWLLAKEAYPELIKRGGGN-------IVFISSIAAYQPMEPLGAYSVSKTTL 661
+ K +++ N I+ + S A P L Y+ SK L
Sbjct: 172 TLHTTKAVLSIMLRERQKNEKGPRCLILTMGSFAGLLPSPYLSTYAGSKAFL 223
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 34.3 bits (75), Expect = 0.018
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +2
Query: 200 IVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGI 337
+VT ++G+G AIAK L GA+V I +R ++ AV L I
Sbjct: 26 LVTGGSQGLGKAIAKELVLRGANVTIVARTVTKLQEAVAELSDSKI 71
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 33.5 bits (73), Expect = 0.032
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 56 KFKHISTHGS--LRVMFRLKFIRSLMNTKMSKTPNFVRANHNDRLKGKVAIVTASTEGIG 229
K++H+ TH + + + I + +T + R ++ G V +VT + GIG
Sbjct: 34 KYEHLITHWAQYTKAAIAVSTIAAFKFWTSGRTTTWER-----KMNGMVVMVTGGSSGIG 88
Query: 230 YAIAKRLGHEGASVVISSRKE 292
+ ++L GA VVI R E
Sbjct: 89 QVVVEKLASLGAQVVILLRTE 109
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 31.1 bits (67), Expect = 0.17
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 356 CHVANSDHRKKLFEVAKSKFGGLDILVSN 442
CH +N RK+L + +K FGG+ + V N
Sbjct: 34 CHYSNRARRKRLVQRSKETFGGITLPVKN 62
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +2
Query: 242 KRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVANSDHRKKLFEVAKSKFGG 421
KRL E A + + S K +N+E+ ++RS + G + +H K L+E +K
Sbjct: 215 KRLQLEMAKLDVESAKPENLEHCKSAVRSAEDELNGAI------EHAKILYEQILNKDYN 268
Query: 422 LDILVS 439
D+L S
Sbjct: 269 TDLLRS 274
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 206 TASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLR 325
T + EG+ ++ + L G V+++S + N+EN ++ L+
Sbjct: 14 TGTAEGLAESLFRSLTRMGYDVLVNSMDDFNLENLLRPLQ 53
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 26.6 bits (56), Expect = 3.6
Identities = 27/96 (28%), Positives = 39/96 (40%)
Frame = +2
Query: 242 KRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVANSDHRKKLFEVAKSKFGG 421
KRL + + KED +L V G + +V N HR+ +S+
Sbjct: 176 KRLEKVANKIRVDWEKEDAAVLLGIALTGWSEQVPGRL-YVCNYCHRRLGVWNLQSEGQD 234
Query: 422 LDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSS 529
D+L + P V P TD W +IFE+ K S
Sbjct: 235 FDVLEEHKKSCPWVIPQPFTDLLGWQQIFELLCKES 270
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/52 (23%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +2
Query: 407 SKFGGLDILVSNAAVNPTVSPILETDEQVWDKIF---EINVKSSWLLAKEAY 553
S+FG + ++ + ++NP+ S ++ T E + ++ EI + +W++ E +
Sbjct: 190 SEFGDVGLMTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFDEVH 241
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 260 GASVVISSRKEDNVENAVKSLRSDGITVEGI--VCHVANSDHRKKLFEVAKSKFGGLDIL 433
G +V ISS +D + SL + + I +C+V N D RK L + S+ G ++ L
Sbjct: 129 GVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNIEEL 188
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 260 GASVVISSRKEDNVENAVKSLRSDGITVEGI--VCHVANSDHRKKLFEVAKSKFGGLDIL 433
G +V ISS +D + SL + + I +C+V N D RK L + S+ G ++ L
Sbjct: 129 GVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNIEEL 188
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 513 ISNILSHTCSSVSKIGETVGLTAAFDTRISKPPNLLLATSNN 388
+ +IL+H S + +V A ++ PP L +ATS N
Sbjct: 370 LKDILNHYSKSYNLQNPSVSTAAGTPLYLASPPALQVATSKN 411
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 380 YDLNLQHDKLFLLL*YHRCVSF*LRFQHYLLFYCL*RLKRLHDP 249
Y+ NL +LF L CV Q Y FYCL R + P
Sbjct: 107 YETNLGKPELFWLDYLATCVRVPYACQGYSSFYCLSIFDRYYKP 150
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 440 NAAVNPTVSPILETDEQVWDKIFEINVKS-SWLLAKEAYPELIKRGGGNIVFIS 598
N AVN PILET E VW + + + A+ Y +L++ V+IS
Sbjct: 492 NLAVN---QPILETPELVWKAYIDFEFEEMEYGKARSIYQQLLRTAPHVKVWIS 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,724
Number of Sequences: 5004
Number of extensions: 60558
Number of successful extensions: 195
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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