Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4m13
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    30   1.4  
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   4.3  
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele...    29   4.3  
Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 291 DGQEQ-EKLIRAGEAYCLA-LDRERARSCNPNTGVWLLAETETGFALLCSC 145
           +G+E  E+ + AG+ YC   +D  R   C    G W L ET     + C+C
Sbjct: 439 EGEEDAERGLVAGKCYCKTNVDGNRCDRCK--NGYWNLTETNVDGCVACTC 487


>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
           protein F02A9.6 protein.
          Length = 1295

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 93  PVGCAPHGRIDDINSASIRCVCDDGYVSDY 4
           P  CA  G  + +N   IRC C +G+  DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441


>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
           protein F02A9.6 protein.
          Length = 1295

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 93  PVGCAPHGRIDDINSASIRCVCDDGYVSDY 4
           P  CA  G  + +N   IRC C +G+  DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441


>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
           C.elegans glp-1 gene,complete cds. ).
          Length = 1295

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 93  PVGCAPHGRIDDINSASIRCVCDDGYVSDY 4
           P  CA  G  + +N   IRC C +G+  DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441


>Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical
           protein F54F7.6 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 512 SIKFTYVYTIAIITRRNNSIIAKCILLIGECPSIFVRTRYFVV 640
           ++ FT + T  ++ R  N++  +CI+ + E P  F  +  FVV
Sbjct: 48  TVVFTQLNTTNVVERLGNNLF-RCIVKVNELPRNFQHSHNFVV 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,088,362
Number of Sequences: 27780
Number of extensions: 353990
Number of successful extensions: 1031
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)