Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4m11
         (323 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    52   2e-06
UniRef50_Q1YKB3 Cluster: Putative uncharacterized protein; n=1; ...    32   2.8  
UniRef50_UPI000155C727 Cluster: PREDICTED: similar to laminin be...    31   3.7  
UniRef50_Q0U1R0 Cluster: Predicted protein; n=1; Phaeosphaeria n...    31   3.7  
UniRef50_A3PZT1 Cluster: Putative uncharacterized protein; n=1; ...    31   6.5  
UniRef50_Q9VUQ9 Cluster: CG6498-PA; n=4; Eumetazoa|Rep: CG6498-P...    30   8.6  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 27/66 (40%), Positives = 34/66 (51%)
 Frame = +3

Query: 3   VNAVXXXXXXXXXXXXTPLXAPVLXXXXXXXXXXXXXXXXXXYYGNLVAGSIVSQLTAAA 182
           VN V            TP+ AP+L                  YYGN+VAGS++SQLT+AA
Sbjct: 9   VNLVGGAIIYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSVISQLTSAA 68

Query: 183 MVAPTP 200
           M+APTP
Sbjct: 69  MLAPTP 74


>UniRef50_Q1YKB3 Cluster: Putative uncharacterized protein; n=1;
           Aurantimonas sp. SI85-9A1|Rep: Putative uncharacterized
           protein - Aurantimonas sp. SI85-9A1
          Length = 215

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +2

Query: 2   GKRGRRCXNIWHWGSXDSIXGSRARFQLSGNS-GRKHSRCCTSILRKFSGR-QHCVTVDC 175
           G  GR+        +     G R+  + SGN  G+   R C     +  GR Q CV    
Sbjct: 52  GNSGRQITGKQKRSNNGQEAGQRSEPRHSGNERGKAEQRWCVDESNRRGGRSQLCVAAAM 111

Query: 176 CCHGSPH 196
            CHGSP+
Sbjct: 112 RCHGSPN 118


>UniRef50_UPI000155C727 Cluster: PREDICTED: similar to laminin beta
            2-like chain; n=1; Ornithorhynchus anatinus|Rep:
            PREDICTED: similar to laminin beta 2-like chain -
            Ornithorhynchus anatinus
          Length = 1850

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -1

Query: 188  YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR 87
            YHGSS Q    A GH   +VCLC+ G A  R  R
Sbjct: 943  YHGSSCQ----ADGHTGQIVCLCAPGYAGSRCDR 972


>UniRef50_Q0U1R0 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 82

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 95  SGRKHSRCCTSILRKFSGRQHCVTVDCCCHGSP 193
           SG     C       F G  HCV+  CCC+G P
Sbjct: 36  SGTYQIACVECPCDGFDGPCHCVSDGCCCNGGP 68


>UniRef50_A3PZT1 Cluster: Putative uncharacterized protein; n=1;
           Mycobacterium sp. JLS|Rep: Putative uncharacterized
           protein - Mycobacterium sp. (strain JLS)
          Length = 82

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 113 RCCTSILRKFSGRQHCVTVDCCCHGSPHAMR 205
           R   S+ R+  GR HCV +DC    S  A R
Sbjct: 27  RSSVSVQRRRGGRDHCVAIDCFAGRSVQAKR 57


>UniRef50_Q9VUQ9 Cluster: CG6498-PA; n=4; Eumetazoa|Rep: CG6498-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 2139

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 83  LSGNSGRKHSRCCTSILRKFSGRQH 157
           LSG+S   HSR  T++LRK S +QH
Sbjct: 188 LSGSSSSLHSRGYTALLRKISYQQH 212


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,547,646
Number of Sequences: 1657284
Number of extensions: 4905636
Number of successful extensions: 9760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9759
length of database: 575,637,011
effective HSP length: 84
effective length of database: 436,425,155
effective search space used: 10037778565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)