Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4m11
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    29   0.77 
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ...    26   7.2  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    25   9.5  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 188 YHGSSSQL*HNAAGH*ISVVCLCSSGCAS 102
           YH +S QL     GH  +V CLCSS  +S
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSS 924


>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 256 EKVRSWSDVENG*CLASPHGVGATMAAAVN 167
           E V SW+   N   L SPH VG + +   N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610


>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 256 EKVRSWSDVENG*CLASPHGVGATMAAAVN 167
           E V SW+   N   L SPH VG + +   N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610


>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 256 EKVRSWSDVENG*CLASPHGVGATMAAAVN 167
           E V SW+   N   L SPH VG + +   N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +2

Query: 2    GKRGRRCXNIW--HWGSXDSIXGSRARFQLSGN 94
            G +G RC      HWGS   + G+  R   +GN
Sbjct: 977  GYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,681,301
Number of Sequences: 27780
Number of extensions: 120169
Number of successful extensions: 212
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)