Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4m01
         (136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual         26   0.78 
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    25   1.0  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   1.8  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    23   5.5  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    23   5.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    22   9.7  

>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 13  YRQLVDSRHVSSDSFGVYVKS*SLILHSFGLLV 111
           YRQLVD R ++ D F  + K+    LH   + V
Sbjct: 34  YRQLVDGRELTLDDFISHAKALRTHLHRLDINV 66


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 170

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 4  SEIYRQLVDSRHVSSDSFGVY 66
          S I+R  + S HVSS S GVY
Sbjct: 6  SSIFRFRLSSLHVSSRSLGVY 26


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   LRDLPPVGRFSPCFFRLLWSLRKILIPYSSQFW 101
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 102 PKTVKNKGLRFYVDSK 55
           PK VKNK  R YVD++
Sbjct: 557 PKLVKNKLGRVYVDTR 572


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 60  SKGVGRNMARIY 25
           SKG+GRN+A  Y
Sbjct: 129 SKGIGRNLANAY 140


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 82   GIKILRRLQRSRKKHG 35
            G+++ RR+++  +KHG
Sbjct: 2271 GLEVTRRMRKIERKHG 2286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,034
Number of Sequences: 5004
Number of extensions: 6676
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 25
effective length of database: 2,237,378
effective search space used: 42510182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)