Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4l19
(593 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68270-12|CAA92573.1| 205|Caenorhabditis elegans Hypothetical p... 56 3e-08
Z68213-6|CAA92442.1| 205|Caenorhabditis elegans Hypothetical pr... 56 3e-08
AF202931-1|AAK69381.1| 205|Caenorhabditis elegans ICln1 protein. 56 3e-08
Z68270-13|CAD21675.1| 225|Caenorhabditis elegans Hypothetical p... 46 2e-05
Z68213-7|CAD21589.1| 225|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AF202932-1|AAK69382.1| 225|Caenorhabditis elegans ICln2 protein. 46 2e-05
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical pr... 28 4.4
S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein. 28 4.4
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 28 4.4
Z93393-15|CAE54926.1| 347|Caenorhabditis elegans Hypothetical p... 27 7.6
>Z68270-12|CAA92573.1| 205|Caenorhabditis elegans Hypothetical
protein C01F6.8a protein.
Length = 205
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Frame = +3
Query: 48 AEPADGVLLQSPSTKLLXNDQELGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISL 227
++P +G+ L + + + LG TLYIT++ VIW S +G ++ YP+I L
Sbjct: 7 SQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVL 62
Query: 228 HAIQREPS--PALYMVLNYELRLPELSQQAGSTXXXXXXXXXXXXQPITQLRFIPENENE 401
HAI + S P+ ++ + + R L + + +P ++RF+P++++
Sbjct: 63 HAISTDVSVFPSEHIFVMVDQRKSGL--ELAAAELEDEESDDDEEEPALEIRFVPDDKDS 120
Query: 402 LQAMYSAMCQGQE 440
L +Y + GQE
Sbjct: 121 LSQIYHQIAVGQE 133
>Z68213-6|CAA92442.1| 205|Caenorhabditis elegans Hypothetical
protein C01F6.8a protein.
Length = 205
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Frame = +3
Query: 48 AEPADGVLLQSPSTKLLXNDQELGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISL 227
++P +G+ L + + + LG TLYIT++ VIW S +G ++ YP+I L
Sbjct: 7 SQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVL 62
Query: 228 HAIQREPS--PALYMVLNYELRLPELSQQAGSTXXXXXXXXXXXXQPITQLRFIPENENE 401
HAI + S P+ ++ + + R L + + +P ++RF+P++++
Sbjct: 63 HAISTDVSVFPSEHIFVMVDQRKSGL--ELAAAELEDEESDDDEEEPALEIRFVPDDKDS 120
Query: 402 LQAMYSAMCQGQE 440
L +Y + GQE
Sbjct: 121 LSQIYHQIAVGQE 133
>AF202931-1|AAK69381.1| 205|Caenorhabditis elegans ICln1 protein.
Length = 205
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Frame = +3
Query: 48 AEPADGVLLQSPSTKLLXNDQELGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISL 227
++P +G+ L + + + LG TLYIT++ VIW S +G ++ YP+I L
Sbjct: 7 SQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVL 62
Query: 228 HAIQREPS--PALYMVLNYELRLPELSQQAGSTXXXXXXXXXXXXQPITQLRFIPENENE 401
HAI + S P+ ++ + + R L + + +P ++RF+P++++
Sbjct: 63 HAISTDVSVFPSEHIFVMVDQRKSGL--ELAAAELEDEESDDDEEEPALEIRFVPDDKDS 120
Query: 402 LQAMYSAMCQGQE 440
L +Y + GQE
Sbjct: 121 LSQIYHQIAVGQE 133
>Z68270-13|CAD21675.1| 225|Caenorhabditis elegans Hypothetical
protein C01F6.8b protein.
Length = 225
Score = 46.4 bits (105), Expect = 2e-05
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Frame = +3
Query: 48 AEPADGVLLQSPSTKLLXNDQELGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISL 227
++P +G+ L + + + LG TLYIT++ VIW S +G ++ YP+I L
Sbjct: 7 SQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVL 62
Query: 228 HAIQRE----PSPALYMVLNYE-----------LR-LPELSQQAG----STXXXXXXXXX 347
HAI + PS ++++++ LR + E +Q G +
Sbjct: 63 HAISTDVSVFPSEHIFVMVDQRKSVRRRRRAPVLRTIQEDDEQRGLELAAAELEDEESDD 122
Query: 348 XXXQPITQLRFIPENENELQAMYSAMCQGQE 440
+P ++RF+P++++ L +Y + GQE
Sbjct: 123 DEEEPALEIRFVPDDKDSLSQIYHQIAVGQE 153
>Z68213-7|CAD21589.1| 225|Caenorhabditis elegans Hypothetical
protein C01F6.8b protein.
Length = 225
Score = 46.4 bits (105), Expect = 2e-05
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Frame = +3
Query: 48 AEPADGVLLQSPSTKLLXNDQELGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISL 227
++P +G+ L + + + LG TLYIT++ VIW S +G ++ YP+I L
Sbjct: 7 SQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVL 62
Query: 228 HAIQRE----PSPALYMVLNYE-----------LR-LPELSQQAG----STXXXXXXXXX 347
HAI + PS ++++++ LR + E +Q G +
Sbjct: 63 HAISTDVSVFPSEHIFVMVDQRKSVRRRRRAPVLRTIQEDDEQRGLELAAAELEDEESDD 122
Query: 348 XXXQPITQLRFIPENENELQAMYSAMCQGQE 440
+P ++RF+P++++ L +Y + GQE
Sbjct: 123 DEEEPALEIRFVPDDKDSLSQIYHQIAVGQE 153
>AF202932-1|AAK69382.1| 225|Caenorhabditis elegans ICln2 protein.
Length = 225
Score = 46.4 bits (105), Expect = 2e-05
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Frame = +3
Query: 48 AEPADGVLLQSPSTKLLXNDQELGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISL 227
++P +G+ L + + + LG TLYIT++ VIW S +G ++ YP+I L
Sbjct: 7 SQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVL 62
Query: 228 HAIQRE----PSPALYMVLNYE-----------LR-LPELSQQAG----STXXXXXXXXX 347
HAI + PS ++++++ LR + E +Q G +
Sbjct: 63 HAISTDVSVFPSEHIFVMVDQRKSVRRRRRAPVLRTIQEDDEQRGLELAAAELEDEESDD 122
Query: 348 XXXQPITQLRFIPENENELQAMYSAMCQGQE 440
+P ++RF+P++++ L +Y + GQE
Sbjct: 123 DEEEPALEIRFVPDDKDSLSQIYHQIAVGQE 153
>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
protein F37D6.1 protein.
Length = 1227
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 442 CIRIRLMRSRMMTHTWTERSLMKGRRSLKMLRRARPTPPPRCDA*GSAP 588
C++ R M S + + WTE + + + S L+ RP P PR + + P
Sbjct: 573 CVKQRKMIS-VEGYQWTENTADESQSSQSQLQPVRPQPLPRTSSKSTIP 620
>Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical
protein R53.3b protein.
Length = 322
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 142 SVMYNVAVPNS*SFXRSFVDGDCSNTPSAGSAKLLDTTT 26
S+ YN AVP+ SF R+ S++PS+ S D T
Sbjct: 186 SLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYT 224
>Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical
protein R53.3a protein.
Length = 543
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 142 SVMYNVAVPNS*SFXRSFVDGDCSNTPSAGSAKLLDTTT 26
S+ YN AVP+ SF R+ S++PS+ S D T
Sbjct: 407 SLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYT 445
>S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein.
Length = 360
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 142 SVMYNVAVPNS*SFXRSFVDGDCSNTPSAGSAKLLDTTT 26
S+ YN AVP+ SF R+ S++PS+ S D T
Sbjct: 186 SLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYT 224
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 142 SVMYNVAVPNS*SFXRSFVDGDCSNTPSAGSAKLLDTTT 26
S+ YN AVP+ SF R+ S++PS+ S D T
Sbjct: 407 SLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYT 445
>Z93393-15|CAE54926.1| 347|Caenorhabditis elegans Hypothetical
protein Y48E1B.16 protein.
Length = 347
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 385 QKTRTNYKPCIRPCVR-DKNCIRIRLMRSRMMTHTWTERSLMKGRRSLKMLRRARPTPPP 561
+ + KP P + DK+ +R ++ ++ H E+ K LR PTP P
Sbjct: 21 ESRKVTQKPAAPPPPKNDKSWVRSKIDSAKEKYHAGKEKLKTKISDVKSKLRGPAPTPQP 80
Query: 562 RCDA*GSAPR 591
R A + P+
Sbjct: 81 RPPAQNNLPK 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,558,899
Number of Sequences: 27780
Number of extensions: 215291
Number of successful extensions: 606
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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