Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4l14
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   1.8  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   5.4  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   5.4  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    24   7.1  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 153 TVGALYLSVKYAIFLVKHRDFKSSSFISKSEQLYTNSSFSLL 28
           T+G +  SV  A+F +   D+ S SF++ +  L   +S ++L
Sbjct: 346 TIGFIIYSVLDALFDLLSLDYSSPSFLNNTLSLMNANSITIL 387


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 44  EFVYNCSDLDINEEDLKSLCLTKNIAYFTERYNAPTVLKA 163
           + V+N +      E++ S  + KN+  F E++ A   LKA
Sbjct: 286 DIVFNYASSKKISEEMISQAIDKNLQEFEEKFQATFPLKA 325


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 96   DFKSSSFISKSEQLYTNSSFSLLGAXKYWFT 4
            D K++   +++  LY N+  +++GA +Y F+
Sbjct: 1165 DLKTNDPYAETNALYQNNPVAIMGAREYIFS 1195


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 117 IFLVKHRDFKSSSFISKS 64
           +F VKHRDFK +    K+
Sbjct: 563 VFFVKHRDFKRTLITMKA 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,623
Number of Sequences: 5004
Number of extensions: 25418
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)