Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4l14
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694...    27   3.8  
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930...    26   8.9  
05_03_0525 + 15002846-15003048,15004814-15004937,15005458-150054...    26   8.9  

>04_04_0348 +
           24568834-24568904,24569019-24569148,24569310-24569459,
           24569546-24569650,24569808-24570029,24570162-24570274,
           24570371-24570470,24571125-24571325,24571401-24571549,
           24571624-24571765,24571851-24571991,24572098-24572286,
           24572622-24572835,24573198-24573291,24573671-24573905,
           24574242-24574433,24574919-24575017,24575443-24575532,
           24575709-24575912,24575994-24576269,24576974-24577096,
           24577453-24577608,24577686-24577802,24577878-24577957,
           24578173-24578377,24578485-24578687,24578882-24578933
          Length = 1350

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 117 IFLVKHRDFKSSSF-ISKSEQLYTNSSFSLL 28
           I +   +DF +SSF +++ +  Y  SSFSLL
Sbjct: 521 ILVASTQDFLTSSFLVTRKDNFYDRSSFSLL 551


>10_08_0459 +
           18092656-18092724,18092827-18092886,18092970-18093038,
           18093134-18093178,18093706-18094332,18094424-18094597,
           18094688-18094991,18095070-18095161,18095253-18095319,
           18095407-18095478,18095613-18095830,18095979-18096113,
           18096225-18096520,18096603-18096774,18096860-18096958,
           18097048-18097179,18097273-18097373,18097460-18097649,
           18097713-18097751
          Length = 986

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 138 YLSVKYAIFLVKHRDFKSSSFISKSE 61
           Y+  K+A ++ KH DFK+S  I + +
Sbjct: 133 YVPNKFATWIAKHVDFKTSQIILRDK 158


>05_03_0525 + 15002846-15003048,15004814-15004937,15005458-15005481,
            15005995-15006779,15006839-15006873,15007108-15007601,
            15007951-15008452,15008725-15008867,15009523-15009576,
            15010255-15010362,15010529-15010705,15011169-15011186,
            15011561-15011938,15012125-15012310,15012356-15013205,
            15013362-15013402,15013491-15013868,15014195-15014236,
            15014528-15014678,15015621-15015670
          Length = 1580

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 101  TEILNLLHLYPSRNNCIQILAFHFWAR 21
            T  LNL  LY  RN   Q+ A   WA+
Sbjct: 1165 TSYLNLKSLYDKRNELKQLFASQDWAK 1191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,700,151
Number of Sequences: 37544
Number of extensions: 130830
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)