Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4l14
         (383 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   1.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   8.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   8.6  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 11  QYXHAPKSEKLEFVYNCSDLDINEEDLKS 97
           +Y   P+ EKL+  +NC     N  D K+
Sbjct: 58  EYGEFPEDEKLKCYFNCVLEKFNVMDKKN 86


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 202 FAVFYECIVNRWL 164
           F+  YE + NRWL
Sbjct: 101 FSAIYEVLENRWL 113


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 117 IFLVKHRDFKSSSFISKSEQL 55
           + ++KHR+F+SS  I  S++L
Sbjct: 654 LMMLKHREFRSS--IKASDKL 672


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 222 HMAFINNSLC 193
           +M F+NNS+C
Sbjct: 625 NMGFLNNSMC 634


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 202 FAVFYECIVNRW 167
           F +F+ECI   W
Sbjct: 457 FLMFFECIAISW 468


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 202 FAVFYECIVNRW 167
           F +F+ECI   W
Sbjct: 510 FLMFFECIAISW 521


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 43  RICIQLFRLGYK*RRFKI 96
           R+C Q+F  G + R+F +
Sbjct: 187 RLCFQVFLEGSQKRKFNV 204


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 43  RICIQLFRLGYK*RRFKI 96
           R+C Q+F  G + R+F +
Sbjct: 187 RLCFQVFLEGSQKRKFNV 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,970
Number of Sequences: 438
Number of extensions: 1689
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)