Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4l11
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   1.0  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    27   2.4  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    27   3.2  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    26   5.5  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   5.5  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   7.3  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    25   7.3  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   9.7  
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    25   9.7  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 217 TNSLPLTHWPRPSLSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSS-LPTVSVFMDSSTR 41
           ++S+P+T     S S   SS S    S +S P+S    I  MS S+ + TV+V   SS+ 
Sbjct: 205 SSSVPITS--STSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSS 262

Query: 40  VLGSSEP 20
              S  P
Sbjct: 263 STSSEVP 269


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 504 VTREHCLIDNDIYDLSKNTWNC 569
           V+R+H +++   YDL   TWNC
Sbjct: 127 VSRKHAVVE---YDLDDQTWNC 145


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 525 IDNDIYDLSKNTWNCRFNRCIKRKVEHQVKK 617
           IDN+I DL KN  + +    + ++  HQ+KK
Sbjct: 94  IDNNISDLKKNLHSNKKLEAVLKEELHQIKK 124


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 271 RHDLLHVWYAK*LLFCRF 218
           R+D LHVW    LL C+F
Sbjct: 20  RYDTLHVWKLIKLLICKF 37


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 374 RDRGHCASSRRREYDSQTKVYVHHAPSKSCVSAH 475
           R R + A SR   Y+   ++Y H + S  C+S +
Sbjct: 479 RHRSNSAGSRFDAYEPIPQLYTHFSHSSECLSVN 512


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 300 SRLECHDDTDECQVYILDAEG 362
           SR EC DD DE   +  DA+G
Sbjct: 274 SRCECLDDLDEPTHFAYDAQG 294


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 73  TVSVFMDSSTRVLGSSEPPLYAY 5
           T  ++M+ ++ + G+S PP Y Y
Sbjct: 194 TTPLYMERASYLFGASNPPAYTY 216


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 194 LAAAFVVAKTLFAVTAPTVD*LFAHLALLPDTPHEQIFFAHSQ 66
           +AAA  VA ++FA  A  +  ++A   +LP   +  IF  +S+
Sbjct: 317 VAAAKTVAPSVFATFAFRISVMYAVTRILPAIQNNIIFLEYSR 359


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 401 RRREYDSQTKVYVHHAPSKSCVSAH 475
           +RRE +  T VYVH+A  +S    H
Sbjct: 35  QRREVELDTPVYVHYAKYRSARFYH 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,090
Number of Sequences: 5004
Number of extensions: 56904
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)