Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4l11
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical...    29   2.2  
AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...    29   2.2  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    29   3.9  
U00058-1|AAL02529.2|  241|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC024751-8|AAK21510.3|  369|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 447 RQVKAACLLIKDDKNNPESVTREHCLIDNDIYDLSK 554
           +  K A +     K+NP+ V R+H LID D+  + K
Sbjct: 329 KDFKCALVWGASAKHNPQRVGRDHVLIDEDVVQVIK 364


>AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 447 RQVKAACLLIKDDKNNPESVTREHCLIDNDIYDLSK 554
           +  K A +     K+NP+ V R+H LID D+  + K
Sbjct: 329 KDFKCALVWGASAKHNPQRVGRDHVLIDEDVVQVIK 364


>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 240 FAYHTCNKSWRCGVSTSKMYSRLECHDDTDECQVYILDAEGNPINVT 380
           F  + C+++   G+S + M   L+C ++ D C +   + EG+ I  T
Sbjct: 23  FDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEENEGDSIIFT 69


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 133 NSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLG 32
           N  P SH   +PH S S+   + +++DS   V G
Sbjct: 127 NQIPDSHNKSVPHFSNSNFAPMVLYLDSEEEVRG 160


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 133 NSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLG 32
           N  P SH   +PH S S+   + +++DS   V G
Sbjct: 127 NQIPDSHNKSVPHFSNSNFAPMVLYLDSEEEVRG 160


>U00058-1|AAL02529.2|  241|Caenorhabditis elegans Hypothetical
           protein W03A5.2 protein.
          Length = 241

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
 Frame = -2

Query: 608 LVLDFTFNASVKPAIPRVFRKIIYIIVDQTVFACHRFGVIFVIFNEQTRSFYLARGERRL 429
           LV DFT     K A   +   I+ ++   +V+   ++  +   F +   S    +G R  
Sbjct: 22  LVCDFTKYIPAKNAYTIMTNHILLLL---SVWMYLKYRELKSFFRQANISIIFIKGSRVN 78

Query: 428 LFENHTHAVSMKRSVH---GHVNGVALSVQNVYLTLVGVVVALEPAVHFRSRNAASPRFV 258
           LF       S + +V+     +N VAL    + L L  + +     + F+ R+   PR++
Sbjct: 79  LFIGLAALTSYQLAVNFPATKINHVALIGNKLALLLANLYIWFHAFLSFKIRDGNVPRWI 138

Query: 257 ARVVRKVIVILPF 219
             ++R  +  + F
Sbjct: 139 LFLIRISLAFVVF 151


>AC024751-8|AAK21510.3|  369|Caenorhabditis elegans Hypothetical
           protein Y18H1A.7 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 126 EELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFAYHTCNKSWRCGVSTSKMYSR 305
           +E+I+ W  D  E   D++G       +  +KR NN      +C KS     ST K+   
Sbjct: 46  KEIIEIWSDDDSE---DDDGDVITGSQEAQLKRLNNEEAGSSSCRKSPETAKSTPKVRKP 102

Query: 306 LE 311
           +E
Sbjct: 103 VE 104


>AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical
           protein F56F4.3 protein.
          Length = 650

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 321 DTDECQVYILDAEGNPINVTVDTALHRDGVSMILKQKSTFTTRQVKAACLL 473
           + D  +++ L A  N   VTV T    DG  M L  ++ F    +K A LL
Sbjct: 311 NNDITKIFELSAWLNAARVTVKTVYIADGTLMALGSRADFRHNFIKDAVLL 361


>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical protein
            C34F6.9 protein.
          Length = 1181

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 24/105 (22%), Positives = 44/105 (41%)
 Frame = +3

Query: 207  KELVKRQNNNHFAYHTCNKSWRCGVSTSKMYSRLECHDDTDECQVYILDAEGNPINVTVD 386
            ++L+ + +NN   Y  C+    CG +    + +    D T+E Q      E +   V +D
Sbjct: 1078 RQLILKDDNNAHNYELCSFIAHCGKNGDNGHYKSFEVDRTNEFQY----NEYDDAKVVLD 1133

Query: 387  TALHRDGVSMILKQKSTFTTRQVKAACLLIKDDKNNPESVTREHC 521
            + L  D ++++L            AA  +I D + N      +HC
Sbjct: 1134 SKLSSD-ITIVLAMFRKQEAVAKDAATDIIFDGRGNIVFANEKHC 1177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,518,080
Number of Sequences: 27780
Number of extensions: 332883
Number of successful extensions: 1118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)