Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4l08
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 31 0.18
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 30 0.31
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 30 0.41
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.94
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.94
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 28 1.2
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 3.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.8
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 27 3.8
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 5.0
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 5.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.0
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.0
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 6.6
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 8.8
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 8.8
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 8.8
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 31.1 bits (67), Expect = 0.18
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = +3
Query: 288 AISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLG 467
A+ AT T S+NP T I N + K F+ PP++++ P +L P+S
Sbjct: 683 ALPATVTTSANPLGFKSTIQRPIPIKNNEDSDSCKAFSQA--PPIATKKPPTFLKPNSPE 740
Query: 468 MAKGVSP 488
AK V P
Sbjct: 741 YAKTVIP 747
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 30.3 bits (65), Expect = 0.31
Identities = 20/77 (25%), Positives = 30/77 (38%)
Frame = +3
Query: 273 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 452
+PPS A+ + + P P P + + NP TP+ P + A + L
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF-SPINPYYAKSWNHTASAPLLP 303
Query: 453 PSSLGMAKGVSPPYFQV 503
P G+ G PY V
Sbjct: 304 P---GLKNGSDYPYLSV 317
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.9 bits (64), Expect = 0.41
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 279 PSPAISATSTRSSN---PRFHTPTTPDLTSIS-INPLTPY*KEFAPGLKP 416
P P+IS T+T SS H PTTPD ++ + L P +P KP
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPPSGSPSKKP 322
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +3
Query: 276 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 437
PP PA ++++ SS+P T +T TS SI P P + PP SS P
Sbjct: 370 PPPPASTSSTGTSSSPLLST-STSCTTSTSIPPTGNSTTPVTPTV-PPTSSSTP 421
Score = 28.7 bits (61), Expect = 0.94
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Frame = +2
Query: 20 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 199
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 200 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 340
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Score = 28.3 bits (60), Expect = 1.2
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = +3
Query: 276 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 455
PP PA ++++ SS+P + +T TS SI P P + PP S+ + S P
Sbjct: 316 PPPPASTSSTGTSSSP-LPSTSTSCTTSTSIPPTGNSTTPVTPTV-PPTSTSSTSTPPPP 373
Query: 456 SSLGMAKGVSPPYFQVNDESQASRLI 533
+S S P + S I
Sbjct: 374 ASTSSTGTSSSPLLSTSTSCTTSTSI 399
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Frame = +2
Query: 32 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 205
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 206 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 340
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 0.94
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 20 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 190
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 191 DVTVEGVNVLATPSSS 238
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +3
Query: 282 SPAISATSTRSS-NPRFHTPTTPDLTSISINPLTP-----Y*KEFAPGLKPPLSSEAPSA 443
SP +SA S +P P+TP + SI+P TP Y + A L PLS + +A
Sbjct: 284 SPELSADKVLSHCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTA 343
Query: 444 YL 449
YL
Sbjct: 344 YL 345
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 267 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 148
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 2 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 115
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 282 SPAISATSTRSSNPRFHTPTTPDLTSIS 365
S IS +ST N FH PT TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 83 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 172
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Frame = +3
Query: 270 IKPPSPAISATSTRSSNPRFHTP----TTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 437
+ +P S+T+ +S P + +TP +S ++N TP P++S
Sbjct: 1578 VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 1637
Query: 438 SAYLTPSSLGMAKGVSPP 491
TP + A SPP
Sbjct: 1638 LNSSTPITSSTALNTSPP 1655
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = +3
Query: 300 TSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKG 479
TST ++ +TP +S +N TP A PP++S TP +
Sbjct: 1616 TSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVN 1675
Query: 480 VSPP 491
S P
Sbjct: 1676 TSTP 1679
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = +3
Query: 282 SPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 461
S + TST ++ +TP +S +N TP A P++S + TP +
Sbjct: 1718 SSTVVNTSTPITSSTVVNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPIT 1777
Query: 462 LGMAKGVSPP 491
A S P
Sbjct: 1778 SSTALNTSTP 1787
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 273 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 452
+PPSP I R+S F +PT S+ + + G+ P SS A A+L+
Sbjct: 494 RPPSPGIVTPPQRTSPSFFVSPTESTRQSLDSRRSFEHSTSSSSGISPSHSS-ASLAHLS 552
Query: 453 PSS 461
+S
Sbjct: 553 QAS 555
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 288 AISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 461
A+ ++ S F PTT S+SI+P K A +P + ++ S TP++
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISPT----KSAAVSSEPNVEADVKSLSSTPAA 122
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 5.0
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 279 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAYLTP 455
P ++S+ FHTPT P T +S +P + + PLS +A S LT
Sbjct: 123 PPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTS 180
Query: 456 SSLGMAKGVSPPYFQVNDESQA 521
S L + SPP V +S +
Sbjct: 181 SPLKDFQS-SPPLSTVLQKSHS 201
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/69 (31%), Positives = 27/69 (39%)
Frame = +3
Query: 285 PAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSL 464
P I S+ SS P P P + PL P + P PP APS P L
Sbjct: 325 PPIGNGSSNSSLPP--PPPPPRSNAAGSIPLPPQGRSAPP---PPPPRSAPSTGRQPPPL 379
Query: 465 GMAKGVSPP 491
++ VS P
Sbjct: 380 SSSRAVSNP 388
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 517 KLRALLVVIPRILRSPPPTHPLIEDV 594
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 252 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 118
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 652 LVTHKELALKVSSIIGTRVYVFDPSCY 732
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 270 IKPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPG--LKPPLSSEAPSA 443
I+ S + TS S++ ++ +TP+ S + LTP + L+ PL +PSA
Sbjct: 294 IRSHSTNTTITSVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSA 353
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 263 LMHQATLPCDLGYINPIIKSPIPYTNHP 346
+ HQA L C GY + + +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,189
Number of Sequences: 5004
Number of extensions: 60918
Number of successful extensions: 289
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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