Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4l06
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9FHN6 Cluster: Monocopper oxidase-like protein SKS2 pr...    38   0.18 
UniRef50_Q9EXH6 Cluster: Internalin J precursor; n=1; Listeria i...    34   3.0  
UniRef50_Q8CXA8 Cluster: DNA polymerase III; n=1; Oceanobacillus...    33   5.2  
UniRef50_A7SF16 Cluster: Predicted protein; n=4; Eumetazoa|Rep: ...    33   9.0  

>UniRef50_Q9FHN6 Cluster: Monocopper oxidase-like protein SKS2
           precursor; n=6; Magnoliophyta|Rep: Monocopper
           oxidase-like protein SKS2 precursor - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 592

 Score = 38.3 bits (85), Expect = 0.18
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +2

Query: 368 TKLNFTDYSVKVNKTYPETSDQRDNRLNYEQALASVARLNYELEQSVTGSGKLHYADQNR 547
           +++NFTD+ V V ++Y        N  +    +AS   +N  + Q VTG G LHY++   
Sbjct: 256 SQMNFTDFDVHVGQSYSFLVTMDQNATSDYYIVASARFVNETVWQRVTGVGILHYSNSKG 315

Query: 548 LAYDP 562
            A  P
Sbjct: 316 PASGP 320


>UniRef50_Q9EXH6 Cluster: Internalin J precursor; n=1; Listeria
           ivanovii|Rep: Internalin J precursor - Listeria ivanovii
          Length = 416

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 25/80 (31%), Positives = 32/80 (40%)
 Frame = +2

Query: 365 LTKLNFTDYSVKVNKTYPETSDQRDNRLNYEQALASVARLNYELEQSVTGSGKLHYADQN 544
           L     TD S   N T  ET D  DN+L+  QALAS+ +L          S        N
Sbjct: 145 LNNNQLTDISALANLTNLETLDAMDNKLSSIQALASLEKLKMLRLSGNQVSDITGLEGLN 204

Query: 545 RLAYDPAVDTMCADPPYLLQ 604
            L Y   ++  C + P   Q
Sbjct: 205 NLEYVEIINQECINEPICYQ 224


>UniRef50_Q8CXA8 Cluster: DNA polymerase III; n=1; Oceanobacillus
           iheyensis|Rep: DNA polymerase III - Oceanobacillus
           iheyensis
          Length = 1106

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +2

Query: 398 KVNKTYPETSDQRDNRLNYEQALASVARLNYELEQSVTGSGKLHYADQNRLAYDP 562
           K+ + Y E +DQ  NRLNYE  L  +  +NY  +  +  +  + YA  N++A  P
Sbjct: 280 KIEERYKERNDQIMNRLNYE--LEVIQSMNYS-DYFLIVADFIQYAKDNQIAVGP 331


>UniRef50_A7SF16 Cluster: Predicted protein; n=4; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 283

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 27/110 (24%), Positives = 47/110 (42%)
 Frame = +2

Query: 305 TPREAAVPPCAAPLDLPMSTLTKLNFTDYSVKVNKTYPETSDQRDNRLNYEQALASVARL 484
           TP + A+PP      +   +L     T ++V+V+      +D   + L+ +Q L  +A L
Sbjct: 156 TPYQLAIPPPGQDGRVIQDSLDAAESTSFNVEVDDLIVMGTDGLFDNLSTDQILTEIAEL 215

Query: 485 NYELEQSVTGSGKLHYADQNRLAYDPAVDTMCADPPYLLQGGYTTGGPRD 634
                +S+             LA+DP+ ++  A     L+G   TGG  D
Sbjct: 216 QDYDAESIQSLADSLAMKARCLAFDPSYESPFAKQA-KLRGLAITGGKPD 264


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,923,099
Number of Sequences: 1657284
Number of extensions: 10165325
Number of successful extensions: 28900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28893
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)