Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4l06
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0789 + 7640021-7640382,7643435-7643480,7644514-7644638,764...    30   2.1  
10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257     29   3.6  
03_02_0383 + 7966929-7968951,7969085-7969104                           29   3.6  
02_05_0683 + 30877731-30878243                                         28   6.3  

>08_01_0789 +
           7640021-7640382,7643435-7643480,7644514-7644638,
           7645028-7645092,7647642-7648186
          Length = 380

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +3

Query: 519 ESYTMPIRTDWHTIPQWTPCAPTLLTFYKE----VILRAVLVTP 638
           + YT P+R DW+ +  W P  P      +E    V+ R +L TP
Sbjct: 271 QDYTYPVR-DWYPVRDWFPAEPARELTDEETAARVVFRQILSTP 313


>10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257
          Length = 421

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 491 ELEQSVTGSGKLHYADQNRLAYDPAVDTMCADPPYLLQGGYTTGGPRDTNA 643
           ++ +S   SG+   AD  +   +         PPY+LQ G++ G P D  A
Sbjct: 183 DVAKSTNQSGQASAADYYQTYQNAVSQAYAYAPPYVLQPGWSQGYPYDVAA 233


>03_02_0383 + 7966929-7968951,7969085-7969104
          Length = 680

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 372 FVSVDMGRSRGA-AHGGTAASRGVSTSSIADRAPAP 268
           FV +  GR RGA A GG AA  GV     A   PAP
Sbjct: 61  FVWLRRGRKRGAGAGGGAAARMGVGVGVGARTQPAP 96


>02_05_0683 + 30877731-30878243
          Length = 170

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 354 GRSRGAAHGGTAASRGVSTSSIADR 280
           GR+R A  GG+ AS G ST+++A R
Sbjct: 118 GRARAAGPGGSGASDGGSTAAMAAR 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,489,493
Number of Sequences: 37544
Number of extensions: 286335
Number of successful extensions: 853
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)