Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4l04
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   2.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   4.0  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   5.2  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.2  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    25   9.2  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    25   9.2  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   9.2  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +1

Query: 217 LWSKYMFPKPFAPTTLKSYKSRFIKIVYCSVDDVHLEDM 333
           +WS  + P+P    +++S+  + + ++   VD++ L D+
Sbjct: 109 VWSYQIIPEPTISNSIESHLRKCLMVLLSRVDEIDLADV 147


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 340  SLDMEFDSIENQTLLIDPQELCRRMLELRSVTKETLQLTINFYTN 474
            S+D  F  I  Q L+  PQ LC ++ ++         +   FYTN
Sbjct: 2259 SIDQFFKDIRKQILI--PQTLCDKIEQILPCLASQCSMLSRFYTN 2301


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 388 DPQELCRRMLELRSVTKETLQLTINF 465
           DP  +C  M  L  VT   LQL INF
Sbjct: 258 DPDTMCSYMSVLPGVTNYFLQLYINF 283


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 355 FDSIENQTLLIDPQELCRRMLELRSVTKETLQL 453
           FDS  N  L I  Q++ +  ++LRSV ++ LQL
Sbjct: 84  FDSEGNVCLAILKQQVFKPSIKLRSVLEQILQL 116


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 458 IVNCSVSLVTDRSSSMRLHSSWGSMRSVWFSIESNSMSNEYDMSSR*TSST 306
           I + S S  +  S+S  + SS  S  S   ++ S+SMS+    SS  TSS+
Sbjct: 290 ISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSS 340


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +1

Query: 298 YCSVDDVHLEDMSYSLDMEFDSIENQTLLIDPQELCRRMLELRSVTKETLQLTINF---Y 468
           YCS +   +  +  +L++    I+N+ LL+  +       EL  + K    +TI+     
Sbjct: 56  YCSAEGFGVASIEEALELRLSGIQNRILLL--EGFFTDEDELSLIDKYNFSITIHCEEQL 113

Query: 469 TNMMNLPEYKIPRMVMLPRDKELKNI 546
            + MN P +K P  V L  D  +  +
Sbjct: 114 KSFMNYP-FKKPVEVHLKLDSGMNRL 138


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 561 FFLFPDIFELLVARQHNHAGN-FVFG 487
           F LFP +F +L+   HN A N F FG
Sbjct: 225 FSLFPCLFTILMKDYHNIAENGFFFG 250


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 415 LELRSVTKETLQLTINFYTNMMNLPEYKIPRMVMLPRDKELKNIRKKEKNLMLKNV 582
           LELRSV ++TL+ T +      NLP  +   M +L   K  +++ K   N    N+
Sbjct: 129 LELRSVLEQTLEKTPSSDALETNLPNVRELVMHLLQSLKYKQSLVKSRLNQSRSNL 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,433
Number of Sequences: 5004
Number of extensions: 64930
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)