Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4l03
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    29   0.16 
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   1.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   2.7  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    25   3.5  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    25   4.7  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    24   8.2  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    24   8.2  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 42  VHGLSXCQIMLYGYIVCFSYEFYYCYGFRMF 134
           VHGL  C ++LY Y  C S+ +YY Y +  F
Sbjct: 618 VHGL--CWVLLYYYQGCPSWTWYYPYHYAPF 646


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 193 IMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPP 297
           +  ATV    N +    AS  Q I V  F+YN+PP
Sbjct: 147 LFCATVQISGNEIYIASASAFQQIYVWKFNYNNPP 181


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 236  LVKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPIT 114
            L+ + FKD+ +  + Y   ++ L + L +  + ++HS PIT
Sbjct: 1732 LLLMDFKDNDLVGVGYLRILSCLLVSLPAMVYTYEHSDPIT 1772


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 4   LELLILLGHXMGAYTDYRYA 63
           +E +IL+GH MG Y    YA
Sbjct: 171 IEKMILVGHSMGGYLSAVYA 190


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 319 LQC*RTVAADRCMKTEQLEYFVNL 248
           LQC R V    C+KT + +Y  NL
Sbjct: 270 LQCFRPVLFKNCLKTVKSKYGANL 293


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 200 IIMYKAHINELNIKLLSTSFVFKHSKPITIVKLI 99
           I+ +KAH+N +NIK       F   +    +K++
Sbjct: 182 ILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMV 215


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 54  SXCQIMLYGYIVCFSYEFY 110
           S  Q + Y  ++CFSY +Y
Sbjct: 213 SELQNLYYDLLLCFSYSYY 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,606
Number of Sequences: 5004
Number of extensions: 22227
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)