Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4l02
(233 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 25 1.0
SPAC750.07c |||S. pombe specific GPI anchored protein family 1|S... 24 3.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 23 4.1
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 23 4.1
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 23 5.4
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 23 5.4
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 23 7.1
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 23 7.1
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 22 9.4
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 22 9.4
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 22 9.4
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 22 9.4
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 1.0
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 59 VIFMDELPMTSVGKVARAKLRQLAQNLPRE*TKTLKYLK*NNILSNIIHYIYIGSKKK 232
+IF D LP T GK+ R LR++ + L L ++ +IIH ++ +KK
Sbjct: 606 LIFSD-LPKTRSGKIMRRILRKILAGEVDQ-IGDLSTLADPKVVEHIIHAVHYAHQKK 661
>SPAC750.07c |||S. pombe specific GPI anchored protein family
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +1
Query: 94 GKGGPREITTI-GAKPTT 144
G GGPR + T+ G+ PTT
Sbjct: 84 GAGGPRLVNTLGGSSPTT 101
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 62 IFMDELPMTSVGKVARAKLRQL 127
IF+D +P+ GK+ KLR L
Sbjct: 2128 IFIDSMPLDIEGKINVDKLRDL 2149
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +3
Query: 45 D*EAELYSWTNCR*HPWE 98
D +A Y W C+ PW+
Sbjct: 384 DEKAAFYEWAACQMEPWD 401
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 143 RE*TKTLKYLK*NNI 187
+E TKTLK+L+ NNI
Sbjct: 57 KEGTKTLKFLQKNNI 71
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 93 TDVIGNSSMNITPPLNLFESDNL 25
+D+ N++ +TPP N+ SDN+
Sbjct: 194 SDLGANAADFVTPPGNVANSDNI 216
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 62 IFMDELPMTSVGKVARAKLRQLAQNLPRE*TKTLKYLK 175
+F D +P+ + + + LR LA+ + + YLK
Sbjct: 342 LFFDSVPLEKINGLEQRALRLLAETKQIDMNRMKDYLK 379
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 59 VIFMDELPMTSVGKVARAKLRQLAQNL 139
V DELP T V R LRQ + L
Sbjct: 211 VHIQDELPKTKVKNYFRTYLRQKPEEL 237
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 5 FTSTRNDKLSDSKRLRGGVIFMDELPMTSVGKVARAKLRQ 124
F + +ND ++ ++L ++ + L S+GK+ RQ
Sbjct: 188 FENRKNDTKNEVQQLSARIVELHNLLAVSLGKLRAENERQ 227
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 141 GRFCANCRNFARATFPTDVIGNSSMNITPPLNL 43
G+F N F +FPT + ++ P NL
Sbjct: 514 GKFNVNAPVFTPRSFPTKPFSATDISSVQPTNL 546
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 22.2 bits (45), Expect = 9.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 95 GKVARAKLRQLAQNLPRE*TKTLKYLK*NNILSNIIHYIY 214
G + L+Q+ + + T YLK +LSNI IY
Sbjct: 247 GDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIY 286
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = +2
Query: 17 RNDKLSDSKRLRGGVIFMDELPMTSVGKVAR 109
R +++ SKR+R + ++++ G+V R
Sbjct: 67 RGERIPPSKRIRKAIAYVNKYASGCFGRVER 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,044,065
Number of Sequences: 5004
Number of extensions: 18193
Number of successful extensions: 41
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -