Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4l02
(233 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0236 - 21781508-21783043,21783307-21783504 33 0.025
02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784 31 0.13
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 31 0.17
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887... 30 0.30
07_03_1438 - 26552160-26552291,26552430-26552535,26552772-26553283 30 0.30
07_03_1390 + 26217623-26218370,26218435-26218934 29 0.53
05_05_0312 - 24009265-24009582,24009779-24009848,24010050-240101... 28 0.92
03_05_0671 + 26608953-26609671,26609775-26610495 28 0.92
04_04_1568 - 34475707-34476822,34476894-34477083,34477330-344774... 27 2.1
01_03_0181 + 13523172-13524641 27 2.8
10_06_0193 - 11663927-11663950,11665681-11666571,11666968-11667348 26 3.7
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 26 3.7
07_01_0084 + 657846-658538,660652-661920 26 4.9
03_05_0048 + 20258561-20259346 26 4.9
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 25 6.5
02_05_0572 + 30082734-30082739,30083136-30083383,30083695-300838... 25 6.5
12_02_0426 - 18959301-18959396,18959593-18959727,18959821-189599... 25 8.6
10_08_1051 - 22562840-22562971,22563474-22563576,22563701-225637... 25 8.6
08_02_0851 - 21866088-21866210,21866311-21866413,21866531-218667... 25 8.6
>09_06_0236 - 21781508-21783043,21783307-21783504
Length = 577
Score = 33.5 bits (73), Expect = 0.025
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 59 VIFMDELPMTSVGKVARAKLRQLAQNL 139
V+F+DELP S GKV + LR +A+ L
Sbjct: 525 VVFVDELPKNSTGKVQKLALRDMARRL 551
>02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784
Length = 1095
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 171 KYFSVLVHSRGRFCANCRNFARATFP-TDVIGNSSMNITPPLNLFE 37
+Y+ L H+ C +C N R TFP T G++++N T + L E
Sbjct: 912 EYYQDLFHALWEACNSCSNTGRETFPLTGGKGSAAINGTRSVKLLE 957
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 40 KKIKRRSYIHGRIADDIRGKGGPREITTIGAKPTTGMN*NTEIFKIKQHPE 192
K+++++ Y +IAD+ R KGG + T I G E FK +++PE
Sbjct: 535 KELEQQEYYDPKIADEEREKGGDEDETLILVHSCAG----NEFFKQQKYPE 581
>08_01_0900 +
8867895-8868938,8869887-8870085,8871500-8871713,
8871854-8871959,8872077-8872199
Length = 561
Score = 29.9 bits (64), Expect = 0.30
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 41 KRLRGGVIFMDELPMTSVGKVARAKLRQLAQNLPRE 148
K++R V F+D++P GK+ R +LR+ Q+L +E
Sbjct: 526 KKIRE-VFFVDKIPKAPSGKILRKELRKQLQHLQQE 560
>07_03_1438 - 26552160-26552291,26552430-26552535,26552772-26553283
Length = 249
Score = 29.9 bits (64), Expect = 0.30
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 23 DKLSDSKRLRGGVIFMDELPMTSVGKVARAKLRQLAQ 133
+K++ K++R V+F+D +P + GK+ R +L+ L Q
Sbjct: 205 NKVAPYKKIRK-VVFVDSIPRSPSGKILRRQLKNLLQ 240
>07_03_1390 + 26217623-26218370,26218435-26218934
Length = 415
Score = 29.1 bits (62), Expect = 0.53
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -3
Query: 195 LLRMLFYFKYFSVLVHSRGRFCANCRNFARATFPTDVIGNSSMNITPPLNLFESDNL 25
++RM+ F F V++ SR RFC +F F +V G + IT P L D++
Sbjct: 76 IIRMVRGFILFRVVIRSRHRFCIPMEDF--DYFVYNVHGRALYRITNPAPLSFHDDV 130
>05_05_0312 -
24009265-24009582,24009779-24009848,24010050-24010107,
24010227-24010269,24010354-24010430,24011013-24011227,
24013167-24013186,24013667-24013680,24014219-24014303
Length = 299
Score = 28.3 bits (60), Expect = 0.92
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 34 GFKKIKRRSYIHGRIADDIRGKGGPREITTIGAKPTTGMN*NTEIFKIKQHPE*Y 198
G ++++ S +H R D I GGP T G G+ I+ +K H + Y
Sbjct: 86 GKQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVP-GITIYHVKSHLQKY 139
>03_05_0671 + 26608953-26609671,26609775-26610495
Length = 479
Score = 28.3 bits (60), Expect = 0.92
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 126 NCRNFARATFPTDVIGNSSMNITPPLNLFESDN 28
+C++F A++ D GNS N+ P+N FE D+
Sbjct: 361 DCKHFEAASYE-DRNGNSIRNVIVPINKFEWDS 392
>04_04_1568 -
34475707-34476822,34476894-34477083,34477330-34477464,
34477571-34477668,34477789-34477979,34478784-34479286,
34480169-34481568,34481655-34481855
Length = 1277
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 59 VIFMDELPMTSVGKV 103
VIF DELP TS GK+
Sbjct: 518 VIFRDELPKTSTGKI 532
>01_03_0181 + 13523172-13524641
Length = 489
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 59 VIFMDELPMTSVGKVARAKLRQLAQ 133
V+ +ELP T+ GKV + LR+ A+
Sbjct: 437 VVVEEELPKTATGKVQKVALRERAK 461
>10_06_0193 - 11663927-11663950,11665681-11666571,11666968-11667348
Length = 431
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -3
Query: 150 HSRGRFCANCRNFARATFPTDVIGNSSMNITPPLNLFESDNLSFRVLV 7
+++ R NCR A PTD GN + P + + + + S+ +V
Sbjct: 276 YTQVRVAVNCRGRAGPAVPTDYFGNMVLWAFPRMQVRDLLSASYAAVV 323
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 198 ILLRMLFYFKYFSVLVHSRGRFCANCRN 115
+++RML Y + F+ V+ G C+ C N
Sbjct: 108 LMIRMLLYCECFAARVYCDGCHCSPCGN 135
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 99 RWPARNYDNWRKTYHGNELKH 161
RWPAR Y + GN L H
Sbjct: 103 RWPAREYSYHHIDHDGNPLPH 123
>03_05_0048 + 20258561-20259346
Length = 261
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 78 CR*HPWERWPARNYD 122
CR W RWPA +D
Sbjct: 40 CRRRRWRRWPAHGHD 54
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 34 GFKKIKRRSYIHGRIADDIRGKGGPREITTI--GAKPTT 144
GF + R S + + A D+ G P TI G PTT
Sbjct: 331 GFSNVARISVPYNQPAADVSSAGAPSPYVTIPPGLSPTT 369
>02_05_0572 +
30082734-30082739,30083136-30083383,30083695-30083888,
30083994-30084136
Length = 196
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 136 VLRQLS*FRAGHLSHGCHRQF 74
V R S FRA H CHRQF
Sbjct: 137 VARLASMFRASITYHHCHRQF 157
>12_02_0426 -
18959301-18959396,18959593-18959727,18959821-18959910,
18960760-18960821,18961186-18961510
Length = 235
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 93 TDVIGNSSMNITPPLNLFESDNL 25
TDV G ++ + PP +L +DN+
Sbjct: 79 TDVAGGAATSTRPPYSLISADNV 101
>10_08_1051 -
22562840-22562971,22563474-22563576,22563701-22563768,
22563896-22564053,22564706-22564895,22565162-22566205
Length = 564
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 26 KLSDSKRLRGGVIFMDELPMTSVGKVARAKLR 121
+++ KR+R VIF++ +P ++ GKV R L+
Sbjct: 521 QVASYKRVRK-VIFVEAIPKSAAGKVLRRLLK 551
>08_02_0851 -
21866088-21866210,21866311-21866413,21866531-21866744,
21866877-21867075,21867171-21868151
Length = 539
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 41 KRLRGGVIFMDELPMTSVGKVARAKLR-QLAQNLP 142
KRL + F+D +P GK+ R LR +LA +P
Sbjct: 504 KRLHK-IFFVDAIPKAPSGKILRKDLRAKLAAGIP 537
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,447,494
Number of Sequences: 37544
Number of extensions: 109427
Number of successful extensions: 255
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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