Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4l02
         (233 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97550-5|AAK18982.2|  497|Caenorhabditis elegans Hypothetical pr...    38   7e-04
U64598-5|AAK39217.3|  638|Caenorhabditis elegans Mechanosensory ...    38   0.001
Z70751-1|CAA94751.1|  544|Caenorhabditis elegans Hypothetical pr...    35   0.007
Z92797-1|CAB07234.1|  552|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U58758-13|AAB93427.1|  565|Caenorhabditis elegans Hypothetical p...    26   3.1  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    26   3.1  
U88308-1|AAB42324.2|  461|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z81027-1|CAB02686.1|  566|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z73428-5|CAA97808.2|  209|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z36948-1|CAA85409.1|  180|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AJ131181-1|CAA10315.1|  962|Caenorhabditis elegans DAF-18 protei...    25   9.5  
AF126286-1|AAD21620.1|  962|Caenorhabditis elegans PTEN phosphat...    25   9.5  
AF098286-1|AAD03420.1|  962|Caenorhabditis elegans DAF-18 protein.     25   9.5  
AF036706-19|AAK39284.1|  962|Caenorhabditis elegans Abnormal dau...    25   9.5  
AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...    25   9.5  

>U97550-5|AAK18982.2|  497|Caenorhabditis elegans Hypothetical
           protein T20F7.7 protein.
          Length = 497

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +2

Query: 2   HFTSTRNDKLSDSKRLRGGVIFMDELPMTSVGKVARAKL 118
           H   T  +KLS  K+LRGGV  + E+P +S GK+ + +L
Sbjct: 456 HLEHTMKEKLSAVKQLRGGVSIIKEMPKSSSGKIQKNRL 494


>U64598-5|AAK39217.3|  638|Caenorhabditis elegans Mechanosensory
           abnormality protein18 protein.
          Length = 638

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 26  KLSDSKRLRGGVIFMDELPMTSVGKVARAKLRQ 124
           K++  K LRGGV F+ E+P +  GK+ R  LRQ
Sbjct: 553 KIATFKELRGGVFFISEIPRSVCGKILRRNLRQ 585


>Z70751-1|CAA94751.1|  544|Caenorhabditis elegans Hypothetical
           protein F11A3.1 protein.
          Length = 544

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +2

Query: 26  KLSDSKRLRGGVIFMDELPMTSVGKVARAKLR 121
           K+S  K+L GGV F++E+P ++ GK+ R  LR
Sbjct: 506 KVSPYKQLEGGVEFIEEIPKSAAGKILRRFLR 537


>Z92797-1|CAB07234.1|  552|Caenorhabditis elegans Hypothetical
           protein H25P06.1 protein.
          Length = 552

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 14  TRNDKLSDSKRLRGGVIFMDEL-PMTSVGKVARAKLRQLAQN 136
           TR DK+ DSK    GV  +D+L     +G++ R  L +L +N
Sbjct: 304 TRYDKIVDSKSDHPGVNSLDKLIAGMCMGELVRLVLERLCEN 345


>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical protein
            K01A6.2 protein.
          Length = 1092

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 73   RIADDIRGKGGPR-----EITTIGAKPTTGMN*NTEIFKIKQH 186
            RIADD   K   R     ++TTI  + T GM+ +  I  IKQH
Sbjct: 1037 RIADDGPAKADGRLQVGDQLTTINGQSTKGMSHDDAIRIIKQH 1079


>U58758-13|AAB93427.1|  565|Caenorhabditis elegans Hypothetical
           protein ZK1127.2 protein.
          Length = 565

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 65  FMDELPMTSVGKVARAKLRQLAQN 136
           F+D +P    GK+ R KL+++A++
Sbjct: 519 FIDSIPKLPSGKIQRKKLKKMAES 542


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 68   MDELPMTSVGKVARAKLRQLAQNLP 142
            +D+ P+T   K+   KL +L +NLP
Sbjct: 2553 IDKFPLTGNSKIDTLKLMELVKNLP 2577


>U88308-1|AAB42324.2|  461|Caenorhabditis elegans Hypothetical
           protein C32E8.6a protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 23  DKLSDSKRLRGGVIFMDELPMTSVGKVARAKL 118
           D L+  K+L   VIF++ELP    GK+ R  L
Sbjct: 430 DNLASYKQL-DDVIFVEELPRNPSGKLVRHML 460


>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical
           protein F59A3.1 protein.
          Length = 1014

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -3

Query: 123 CRNFARATFPTDVIGNSSMNITPPLN 46
           C N+ +  + TD++ N+ +++ P +N
Sbjct: 157 CLNYGKNKYLTDLVNNARIHLMPSMN 182


>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 225 LEPIYI*CIILLRMLFYFKYFSVLVHSRGRFCA 127
           L P+Y+  +ILL +LF++ +F +      R  A
Sbjct: 80  LLPLYL-LVILLSLLFFYNFFPITTTETNRSSA 111


>Z81027-1|CAB02686.1|  566|Caenorhabditis elegans Hypothetical
           protein AH10.1 protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 65  FMDELPMTSVGKVARAKLRQLA 130
           F+D +P    GK+ R KL+++A
Sbjct: 519 FIDAIPKLPSGKIQRKKLKEMA 540


>Z73428-5|CAA97808.2|  209|Caenorhabditis elegans Hypothetical
           protein M142.5 protein.
          Length = 209

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 98  KVARAKLRQLAQNLPRE*TKTLKYL 172
           K ARAK  Q AQN P   T+T + L
Sbjct: 78  KFARAKTEQFAQNNPVNGTRTTERL 102


>Z36948-1|CAA85409.1|  180|Caenorhabditis elegans Hypothetical
           protein D2089.2 protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 230 FFWSQYIYNV*YYSGCCFI 174
           F+W  + +N  YY   CF+
Sbjct: 145 FWWMTFWFNFLYYGAMCFV 163


>AJ131181-1|CAA10315.1|  962|Caenorhabditis elegans DAF-18 protein
           protein.
          Length = 962

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 55  RSYIHGRIADDIRGKGGPREI 117
           +SY     + DIRG GGP EI
Sbjct: 473 KSYTESGKSGDIRGVGGPFEI 493


>AF126286-1|AAD21620.1|  962|Caenorhabditis elegans PTEN
           phosphatidylinositol 3' phosphatasehomolog DAF-18
           protein.
          Length = 962

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 55  RSYIHGRIADDIRGKGGPREI 117
           +SY     + DIRG GGP EI
Sbjct: 473 KSYTESGKSGDIRGVGGPFEI 493


>AF098286-1|AAD03420.1|  962|Caenorhabditis elegans DAF-18 protein.
          Length = 962

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 55  RSYIHGRIADDIRGKGGPREI 117
           +SY     + DIRG GGP EI
Sbjct: 473 KSYTESGKSGDIRGVGGPFEI 493


>AF036706-19|AAK39284.1|  962|Caenorhabditis elegans Abnormal dauer
           formation protein 18 protein.
          Length = 962

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 55  RSYIHGRIADDIRGKGGPREI 117
           +SY     + DIRG GGP EI
Sbjct: 473 KSYTESGKSGDIRGVGGPFEI 493


>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 31  VGFKKIKRRSYIHGRIADDIRGKGGPREITTIGAKPTTGM 150
           +GF  +     + G + DD        +  TIGA P  G+
Sbjct: 12  LGFCAVYAADVVDGEVTDDAPKNSQEDDDLTIGASPDAGL 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,676,068
Number of Sequences: 27780
Number of extensions: 99624
Number of successful extensions: 260
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)