Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4l02
         (233 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   2.0  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   2.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   2.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   8.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   8.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   8.0  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    19   8.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    19   8.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   8.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   8.0  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 71  DELPMTSVGKVARAKLRQL 127
           D++  +S+G + RAK+R L
Sbjct: 241 DKIRRSSIGFLTRAKIRTL 259


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 100 GGPREITTIGAKPTTGMN*NTEIFKIKQHPE*YYTL 207
           GG R  +T  + PT        +F I  HP   ++L
Sbjct: 112 GGCRNFSTCSSHPTAAFISYGTLFFIYVHPSATFSL 147


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 231 FFLEPIYI*CIILLRML 181
           +F+EPIY   I+L  +L
Sbjct: 454 YFIEPIYFHSIVLGSLL 470


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -1

Query: 215 YIYNV*YYSGCCFIL 171
           Y+ ++  Y G CF++
Sbjct: 279 YVKSIDVYLGTCFVM 293


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -1

Query: 215 YIYNV*YYSGCCFIL 171
           Y+ ++  Y G CF++
Sbjct: 279 YVKSIDVYLGTCFVM 293


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 49  KRRSYIHGRIADDIRGKGGPREITTI 126
           K+R+   GR++ D   K  P    T+
Sbjct: 243 KKRTRAEGRLSSDNMSKKSPVRKATL 268


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 85  DIRGKGGPREITTIGAKPTTGMN*N 159
           D+RG    R   T   +PT GM  N
Sbjct: 59  DLRGIYSNRTDFTTTFRPTAGMTFN 83


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -1

Query: 215 YIYNV*YYSGCCFIL 171
           Y+ ++  Y G CF++
Sbjct: 218 YVKSIDVYLGTCFVM 232


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 23  DKLSD-SKRLRGGVIFMDELPM 85
           D + D + RL+G +I+MD   M
Sbjct: 297 DSVDDRTLRLKGQMIYMDNWKM 318


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 192 LRMLFYFKYFSVL 154
           LRM+ YF  F+ L
Sbjct: 523 LRMILYFSEFAYL 535


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,888
Number of Sequences: 438
Number of extensions: 1610
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3772710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)