Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4k22
(382 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 49 2e-07
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 49 3e-07
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 28 0.57
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 26 1.7
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 25 3.0
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 25 4.0
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 25 5.3
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 24 7.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 24 9.3
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 24 9.3
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 24 9.3
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 49.2 bits (112), Expect = 2e-07
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3
Query: 174 HEGVSCDSCLKNNFRGRRYKCLICIDYDLCATC 272
H V CD+CL + G R+ CL+C DYDLC++C
Sbjct: 207 HRSVQCDNCLAHPIVGPRFHCLVCEDYDLCSSC 239
Score = 40.7 bits (91), Expect = 8e-05
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 189 CDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQH 302
CD C + RYKC +C DYD+C +C + +N H
Sbjct: 136 CDHC-EQPIHNVRYKCSVCDDYDICESCLTDNSHSNTH 172
Score = 37.9 bits (84), Expect = 5e-04
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 141 FQRRSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGA 287
F+ + + R V+C++CLK R + C C D+D+C CY A
Sbjct: 46 FEHNNNSPTLRSSSVACNTCLKI-IRNDSFHCTKCFDFDVCRDCYAKQA 93
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 48.8 bits (111), Expect = 3e-07
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 189 CDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQCILSRS--DFDLYYG 362
C+ C ++ R +C+ C+D+DLC C+ SGA+ H HP + I + S FD +G
Sbjct: 8 CNVCAQDITRSIHIRCVECVDFDLCIPCFTSGASLGTHHPSHPYRIIETNSYPIFDENWG 67
Query: 363 GE 368
+
Sbjct: 68 AD 69
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 0.57
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 5 VGLGLLGNFCYKPCILLIIICC 70
+GL LGN CY C+L + C
Sbjct: 72 IGLTNLGNTCYMNCVLQCLFAC 93
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 1.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 235 HLYRRPLKLFFKQESQLTPSWRFI 164
H YR+PLKL+ K E W F+
Sbjct: 217 HSYRQPLKLYAKPEELGDMFWPFL 240
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +3
Query: 153 SLAKMNRHEGVS---CDSCLKNNFRGRRYKCLICIDY 254
SL + +R + +S CDSC K++ + + C+ +D+
Sbjct: 208 SLMEADREQHISDYKCDSCFKSSPKHSKTSCIRTVDW 244
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 267 TCYESGATTNQHTTEHPMQCILSRSDFDLY 356
+C ES +NQ T M+ R D D+Y
Sbjct: 487 SCKESSEFSNQTTENSEMEFFDDRPDLDMY 516
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 24.6 bits (51), Expect = 5.3
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 180 GVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQCILSRSD 344
G+ D L N+ R + L+C A C +S T+Q +QC+L +D
Sbjct: 269 GIIKDKELDNSARQAALELLVCFSEGAPAMCRKSSDYTDQLV----LQCLLLMTD 319
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.2 bits (50), Expect = 7.0
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +3
Query: 144 QRRSLAKMNRHEGVSCDS-----CLKNNFRGRRYKCLICIDYDLCATCYE 278
Q+ SL+ ++ + DS C N F Y+ Y++C +CY+
Sbjct: 216 QKPSLSNLHENNIDQSDSPQHCYCCGNKFNESYYQSQTAQKYNVCISCYQ 265
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 303 TTEHPMQCILSRSDF 347
T EH QCILS S F
Sbjct: 126 TIEHSPQCILSTSSF 140
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 180 GVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESG 284
GV+C +N + ++Y D+C CY+ G
Sbjct: 197 GVNCSQTWYHNLKNKKY--------DICPNCYKQG 223
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +3
Query: 255 DLCATCYESGA--TTNQHTTEH 314
DLC TC++SG T +H+ H
Sbjct: 39 DLCLTCFQSGCGETGLKHSLVH 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,543
Number of Sequences: 5004
Number of extensions: 29331
Number of successful extensions: 82
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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