Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4k22
(382 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14429-1|AAA28219.2| 575|Caenorhabditis elegans Hypothetical pr... 76 7e-15
AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein ( Cae... 57 4e-09
AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin ... 57 4e-09
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 50 4e-07
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 50 4e-07
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 50 4e-07
AL023834-1|CAA19481.1| 177|Caenorhabditis elegans Hypothetical ... 47 5e-06
U61947-2|AAB03135.1| 498|Caenorhabditis elegans Hypothetical pr... 44 4e-05
Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical pr... 43 9e-05
Z82055-5|CAB04847.1| 229|Caenorhabditis elegans Hypothetical pr... 42 1e-04
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 41 3e-04
Z54269-1|CAA91022.2| 815|Caenorhabditis elegans Hypothetical pr... 36 0.007
AC024772-1|AAF60536.2| 242|Caenorhabditis elegans Hypothetical ... 36 0.013
Z77656-4|CAH04701.1| 536|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z72509-2|CAA96646.1| 520|Caenorhabditis elegans Hypothetical pr... 26 7.9
>L14429-1|AAA28219.2| 575|Caenorhabditis elegans Hypothetical
protein ZK652.6a protein.
Length = 575
Score = 76.2 bits (179), Expect = 7e-15
Identities = 37/73 (50%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Frame = +3
Query: 174 HEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQ--------HTTEHPMQCI 329
HEGVSCD C F G RYKCL C DYDLC +C+ + +Q H HPMQ I
Sbjct: 9 HEGVSCDGCAFTAFAGNRYKCLRCSDYDLCFSCFTTKNYGDQQTIADIPIHDESHPMQLI 68
Query: 330 LSRSDFDLYYGGE 368
LS DFDL Y G+
Sbjct: 69 LSSVDFDLVYQGD 81
>AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein (
Caenorhabditis elegansmRNA for dystrobrevin. ).
Length = 590
Score = 57.2 bits (132), Expect = 4e-09
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +3
Query: 150 RSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQ 323
R + N + V CD+C +F G RYKC C +Y LC +C+ G T+ H+ EH M+
Sbjct: 251 RMASVSNVYHPVVCDACQVRSFTGFRYKCQRCANYQLCQSCFWRGRTSQNHSNEHEMK 308
>AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin
homolog protein 1 protein.
Length = 590
Score = 57.2 bits (132), Expect = 4e-09
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +3
Query: 150 RSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQ 323
R + N + V CD+C +F G RYKC C +Y LC +C+ G T+ H+ EH M+
Sbjct: 251 RMASVSNVYHPVVCDACQVRSFTGFRYKCQRCANYQLCQSCFWRGRTSQNHSNEHEMK 308
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 50.4 bits (115), Expect = 4e-07
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +3
Query: 147 RRSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQ 323
R +++ +H C+ C G RY+CL C + DLC C+ S T H T HPMQ
Sbjct: 3293 RLVISESTKHAS-KCNVCKMFPIIGIRYRCLTCFNCDLCQNCFFSQRTAKSHRTNHPMQ 3350
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 50.4 bits (115), Expect = 4e-07
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +3
Query: 147 RRSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQ 323
R +++ +H C+ C G RY+CL C + DLC C+ S T H T HPMQ
Sbjct: 3293 RLVISESTKHAS-KCNVCKMFPIIGIRYRCLTCFNCDLCQNCFFSQRTAKSHRTNHPMQ 3350
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 50.4 bits (115), Expect = 4e-07
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +3
Query: 147 RRSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQ 323
R +++ +H C+ C G RY+CL C + DLC C+ S T H T HPMQ
Sbjct: 3293 RLVISESTKHAS-KCNVCKMFPIIGIRYRCLTCFNCDLCQNCFFSQRTAKSHRTNHPMQ 3350
>AL023834-1|CAA19481.1| 177|Caenorhabditis elegans Hypothetical
protein Y32B12A.1 protein.
Length = 177
Score = 46.8 bits (106), Expect = 5e-06
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +3
Query: 174 HEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHT 305
H V CDSC G R+KC IC DYD+C++C E+ QHT
Sbjct: 130 HPIVRCDSCY-TTITGHRFKCTICTDYDICSSC-EARNAHAQHT 171
>U61947-2|AAB03135.1| 498|Caenorhabditis elegans Hypothetical
protein C06G3.6 protein.
Length = 498
Score = 44.0 bits (99), Expect = 4e-05
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +3
Query: 147 RRSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESG 284
+ S HE SCD C ++ G R+KC IC +YDLC TC +G
Sbjct: 183 KNSFKNKEVHEA-SCDKC-QDLIIGHRFKCAICYNYDLCETCEAAG 226
>Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical
protein T12G3.1 protein.
Length = 693
Score = 42.7 bits (96), Expect = 9e-05
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +3
Query: 186 SCDSCLKNNFRGRRYKCLICIDYDLCATC 272
SCD+CL + G R+KCL C DYDLC C
Sbjct: 183 SCDACL-GDIIGHRFKCLECADYDLCEKC 210
>Z82055-5|CAB04847.1| 229|Caenorhabditis elegans Hypothetical
protein T26H2.5 protein.
Length = 229
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +3
Query: 189 CDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQH 302
CDSC GRRYKC +C D+D+C C E+ + QH
Sbjct: 146 CDSC-GTQIAGRRYKCTMCADFDICERC-EAKSVHLQH 181
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 41.1 bits (92), Expect = 3e-04
Identities = 25/55 (45%), Positives = 26/55 (47%)
Frame = +3
Query: 189 CDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQCILSRSDFDL 353
CD C RYKC IC DYDLC C N H H M ILS SD +L
Sbjct: 452 CDECKAECNWNNRYKCTICADYDLCRQC----EAKNLH-ANHAMLRILS-SDTEL 500
>Z54269-1|CAA91022.2| 815|Caenorhabditis elegans Hypothetical
protein F02C12.1 protein.
Length = 815
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 189 CDSCLKNNFRGRRYKCL-ICIDYDLCATCY 275
C SC F G RY C IC DY +CATC+
Sbjct: 99 CASCGSKVFPGLRYVCPEICPDYGICATCF 128
>AC024772-1|AAF60536.2| 242|Caenorhabditis elegans Hypothetical
protein Y40C5A.1 protein.
Length = 242
Score = 35.5 bits (78), Expect = 0.013
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 174 HEGVSCDSCLKNNFRGRRYKCLICIDYDLCATC 272
H C +C + G RY CL C DYD+C C
Sbjct: 161 HHDTPCRNCFRI-IVGSRYHCLQCPDYDICGDC 192
>Z77656-4|CAH04701.1| 536|Caenorhabditis elegans Hypothetical
protein F07B10.5 protein.
Length = 536
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 20 LGNFCYKPCILLIIICCATYFTLVNLIAPKI 112
L NF Y PC L++++C +FT A +I
Sbjct: 280 LMNF-YVPCALVVLLCWVAFFTKREATAERI 309
>Z72509-2|CAA96646.1| 520|Caenorhabditis elegans Hypothetical
protein F32G8.2 protein.
Length = 520
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 74 TYFTLVNLIAPKIEAFLVPTSVFSTTFSGENES 172
+Y ++NL+ PK L P S+ STT S ++E+
Sbjct: 405 SYHLIMNLLDPKTSFNLSPFSLQSTTRSCQSEN 437
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,586,983
Number of Sequences: 27780
Number of extensions: 166512
Number of successful extensions: 430
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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