Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4k22
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.13 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   2.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   3.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   3.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   4.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   4.9  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    20   8.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   8.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 0.13
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 20  LGNFC---YKPCILLIIICCATYFTLVNLIAPKIEAFLVPTSVFSTTFSG 160
           +GNF    Y PC+LL+++   +++  +N  A      L  T+V + TF G
Sbjct: 213 MGNFLIQVYGPCVLLVVLSWVSFW--LNREATADRVSLGITTVLTMTFLG 260


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 241 FASITTCALLATSPAL 288
           F +ITTC ++  +PA+
Sbjct: 56  FGNITTCTVIIKNPAM 71


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 183 VSCDSCLKNNFRGRRYKCLICID 251
           V+  +CL+ +F G   +CL+ ++
Sbjct: 421 VNSVNCLRESFIGTLQRCLLSLE 443


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 183 VSCDSCLKNNFRGRRYKCLICID 251
           V+  +CL+ +F G   +CL+ ++
Sbjct: 459 VNSVNCLRESFIGTLQRCLLSLE 481


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 35  YKPCILLIIICCATY 79
           Y PCI+++ I C  Y
Sbjct: 202 YVPCIVMLGIYCRLY 216


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 276 ESGATTNQHTTEHP 317
           ESG TT Q  T HP
Sbjct: 454 ESGTTTLQTRTMHP 467


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 319 CSAFFLEVILI 351
           C+ FFL VILI
Sbjct: 7   CTFFFLSVILI 17


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 4/16 (25%), Positives = 12/16 (75%)
 Frame = +2

Query: 35  YKPCILLIIICCATYF 82
           Y PC+L++++   +++
Sbjct: 252 YVPCVLIVVLSWVSFW 267


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 232 LYRRPLKLFFKQESQLTPSWRF 167
           L+R PL  FF    +L+   RF
Sbjct: 233 LFRIPLVSFFSTSPELSNKQRF 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,932
Number of Sequences: 438
Number of extensions: 2017
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)