Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4k21
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    36   0.031
01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605     29   3.5  
11_06_0389 + 23055896-23056486,23056957-23057109,23057652-230579...    29   4.7  

>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
            10791796-10791903,10793133-10797686,10798347-10798461,
            10799597-10799724,10799843-10800043,10800158-10800227,
            10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +2

Query: 464  EIENDKIYKLVETVDSSNKLSRRQVDFL-IHALLNNVSVTFTLHRFVDDNVLTQDELSFL 640
            ++  DK   +VE++DSS ++ + Q D L +  LL N      L   VDD   T+DE+  L
Sbjct: 1404 QVGTDKSRDIVESIDSSERVLKYQDDILQLKVLLTN------LEEQVDDLRSTKDEVEIL 1457

Query: 641  ANFLVTKLDE 670
               L +KL+E
Sbjct: 1458 NMVLKSKLEE 1467


>01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605
          Length = 821

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 131 SPAIISKNTESNVEDIPSHKAKSVRKKKLEIEQALDAILNKNTSSID 271
           +PA    N  + V+++ +H +K   K+ + IE  + A+ N+N  + D
Sbjct: 753 APAATKDNARAYVQNLINHVSKGTPKRPVPIETYIFAMFNENEKTGD 799


>11_06_0389 +
           23055896-23056486,23056957-23057109,23057652-23057957,
           23058558-23058995
          Length = 495

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -3

Query: 301 IGHFNEHLLSIY*AGIFV*NRIKRLLDFQFFFSDALSFMTRYVFYVRLGVFTYNGRADDD 122
           IGHF    +S    G FV NR+ +L + Q    + L+++  Y+ ++ L +   N      
Sbjct: 322 IGHFESGEISSKGYGSFVSNRVNKLQELQGEDKERLAWILSYITHL-LSLLARNSSMSKR 380

Query: 121 NEHEKQ 104
           +  E Q
Sbjct: 381 HRKENQ 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,690,750
Number of Sequences: 37544
Number of extensions: 245958
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)