Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4k21
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical...    29   4.2  
AL031627-4|CAA20957.1|  230|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical...    28   7.4  
Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF100669-2|AAK39264.1|  546|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical
           protein C47E8.5 protein.
          Length = 702

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 140 IISKNTESNVEDIPSHKAKSVRKKKLEIEQALDAILNKNTSSI 268
           ++ K  E  VED  + +AK   KK+ E+E   D    K T  I
Sbjct: 209 VVEKEREKEVEDEEAVEAKDEEKKEGEVENVADDADKKKTKKI 251


>AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical
           protein Y75B8A.19 protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 440 VINMFLNDEIENDKIYKL 493
           V+ +FLNDE+ NDK+Y L
Sbjct: 206 VVEIFLNDELLNDKLYIL 223


>AL031627-4|CAA20957.1|  230|Caenorhabditis elegans Hypothetical
           protein Y102A5C.13 protein.
          Length = 230

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -1

Query: 300 LDILTSTYYQSIELVFLFKIASSACSISNFFFRTLLAL*LGMSSTLDSV 154
           +DI+ S  ++  + ++++ I SS   I N F  T+  + LG  +  D++
Sbjct: 114 IDIVESEQWKRAKSIYVYSIISSNFPIENLFHLTVFCVPLGELAVSDAI 162


>AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical
           protein C30F12.3 protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 452 FLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVT 580
           F  D+  N+KIYK V TV     L+R ++     AL +  S T
Sbjct: 207 FFRDKRNNEKIYKEVVTVKKIQLLTRMRISLSAEALGSESSHT 249


>Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 267 IELVFLFKIASSACSISNFFFRTLLAL*LGMSSTLDSVFL 148
           IEL+F   +  SA +++ FF R L  +  G+   L+S+FL
Sbjct: 174 IELLFHHVVVLSAFAVTMFFNRFLGVVVFGLLMELNSIFL 213


>U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical
           protein K01A12.3 protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 256 IFV*NRIKRLLDFQFFFSDALSFMTRYVFYVRLGVFTY 143
           I V    K  L FQFF+   L  ++ ++F+++   F Y
Sbjct: 276 IIVTGNFKARLTFQFFYPSILCTISTFLFFIKPYAFEY 313


>AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 267 IELVFLFKIASSACSISNFFFRTLLAL*LGMSSTLDSVFL 148
           IEL+F   +  SA +++ FF R L  +  G+   L+S+FL
Sbjct: 174 IELLFHHVVVLSAFAVTMFFNRFLGVVVFGLLMELNSIFL 213


>Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical
           protein C33D3.3 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 494 LVCRFCHFQFHRLKT 450
           LVCR CH  FH  KT
Sbjct: 162 LVCRNCHLYFHHYKT 176


>AF100669-2|AAK39264.1|  546|Caenorhabditis elegans Hypothetical
           protein R11E3.2 protein.
          Length = 546

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -1

Query: 243 IASSACSISNFFFRTLLAL*LGMSSTLDSVFLLIMAGLTTIMNTRNN 103
           +A   C ++    R L+ + L +S  L  + + ++ GLT  ++  NN
Sbjct: 395 LAIGICMVNGVVLRNLMTVDLRLSRNLTIMGIAVIMGLTVALHFENN 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,766,363
Number of Sequences: 27780
Number of extensions: 254130
Number of successful extensions: 707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)