Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4k20
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    48   2e-06
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    30   0.39 
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    29   0.52 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    29   0.69 
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   6.4  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   6.4  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   8.5  

>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 4/155 (2%)
 Frame = +1

Query: 283 NLLHSDDPSGGGFLNTTNQFGNTATPKKTGRRAARTAPIVIRQALHSGEEGV----KIWG 450
           N   S    GG   N  +Q    +  ++ G    +  P+ I+Q L++ +       KI G
Sbjct: 16  NSAFSPGMGGGAGFNEYDQSSQPSVDRQQGA-GNKLRPVTIKQILNASQVHADAEFKIDG 74

Query: 451 TEXXXXXXXXXXXXXXMQSTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYI 630
            E               Q+T  TY I+D TG +    W   +A+        ++  + Y+
Sbjct: 75  VEVGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIEVRHWEHIDALS-------ELATDTYV 127

Query: 631 QIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQ 735
           ++YGN+K   G   + +  I  + D N + FH+ +
Sbjct: 128 RVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLE 162


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = -1

Query: 468 HYLNFCTPYFHTFFSRMQS-----LPDDYRCCP 385
           HYL+ C+PY  +F  R++S     LPD  + CP
Sbjct: 227 HYLSDCSPYTGSFVQRIRSILTEPLPDISKSCP 259


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +1

Query: 505  STKITYTIQDITGRMRAVLWLDQE-AMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 681
            +T I + +Q +  R +A+ + ++  A ++E +S     + D    YG +K      V   
Sbjct: 1001 NTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMD---AYGTLKPVNVGSVKAV 1057

Query: 682  FKIMPVTDVNIITFHY 729
             ++M  TDV I++ HY
Sbjct: 1058 LELMERTDVPILSMHY 1073


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 295  SDDPSGGGFLNTTNQFGNTATPKKT 369
            SD PSGG F    N FGN  T ++T
Sbjct: 1008 SDIPSGGVFTKYRNHFGNLMTSEET 1032


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 107 ATRFTYFIFQKMMIYFVSVIFN 42
           +T+ T FIF  +M+ F+ +IF+
Sbjct: 425 STKITVFIFLYLMLTFIGIIFS 446


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 150 TKKFKPYYLFY*DRFGIV*CIVPLLLLEKSSTNNFDLYFKTMWN--EFVTF 296
           T K KP Y     RF IV  +  +L L  ++TN F+ Y   + N   F TF
Sbjct: 127 TPKAKPLYFLLDKRFWIVFFLGQVLSLCITATNTFNGYMSGISNIPAFQTF 177


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 456 FCTPYFHTFFSRMQSLPDDYRCCPCRSTTRFLRCCSI 346
           FC+ Y    FS  Q +  D+R    ++T R + C  +
Sbjct: 173 FCSSYQSQVFSPGQKIVFDFRSYNIKATVRTISCVDL 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,504
Number of Sequences: 5004
Number of extensions: 59604
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)