Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4k20
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1313 - 35658599-35658683,35659231-35659313,35659394-356594... 64 8e-11
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 40 0.003
02_05_0049 - 25423260-25423344,25423415-25423483,25424143-254242... 30 1.7
01_06_1618 - 38681729-38683989,38685577-38685796 30 1.7
11_06_0510 + 24420402-24422582 29 2.9
02_05_0600 - 30273080-30274692,30274709-30274949 29 2.9
01_01_0381 - 2961422-2963917 28 6.7
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467 28 8.8
01_05_0464 - 22470963-22472291 28 8.8
01_01_0018 + 139150-140415 28 8.8
>02_05_1313 -
35658599-35658683,35659231-35659313,35659394-35659489,
35659615-35659693,35659775-35659852,35659989-35660030,
35660435-35660532,35660628-35660747,35660840-35660926
Length = 255
Score = 64.5 bits (150), Expect = 8e-11
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Frame = +1
Query: 280 MNLLHSDDPSGGGFLNTTNQFGNTATPKKTGRRAARTAPIVIRQ---ALHSGEEGVK--- 441
M+ D S F ++ N ++ TP K+ R A+ T P+ ++Q A SG G K
Sbjct: 1 MSFSQPDAFSPSQFTSSQNAAADSTTPSKS-RGASSTMPLTVKQISEAQQSGITGEKGAP 59
Query: 442 --IWGTEXXXXXXXXXXXXXXMQSTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQ 615
+ G E ++T +++TI D TGR+ + W++ A E + VQ
Sbjct: 60 FVVDGVETANVRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGADSAETAA---VQ 116
Query: 616 VNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQ 735
Y+ + G++K + K AF I PVTD N +T H+ Q
Sbjct: 117 NGMYVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQ 156
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +1
Query: 502 QSTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 681
+ T + +T+ D TG++ V W+ ++ + DTS +Q Y+++ N+ + K +A
Sbjct: 98 RDTDVCFTLDDSTGKIPLVRWITDQS-DTRDTS--YIQEGVYVKVQVNLMGFQAKKQGLA 154
Query: 682 FKIMPVTDVNIITFHYFQ 735
I P+ + N + H+ +
Sbjct: 155 RSIRPINNFNEVVLHFIE 172
>02_05_0049 -
25423260-25423344,25423415-25423483,25424143-25424231,
25424315-25424407,25424516-25424594,25425557-25425657,
25425864-25425944,25426369-25426740
Length = 322
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1
Query: 622 DYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHY 729
DY+ + G +K +G + ++A+ + +T+ N +T H+
Sbjct: 162 DYVIVNGGLKGFQGKRQVVAYSVRRITNFNDVTHHF 197
>01_06_1618 - 38681729-38683989,38685577-38685796
Length = 826
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 514 ITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDY 627
+T + D+TG+++ + W+D A V S PK Q + Y
Sbjct: 283 LTRFVVDVTGQIKFMTWVDSAAQWVLFWSEPKAQCDVY 320
>11_06_0510 + 24420402-24422582
Length = 726
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 432 FFSRMQSLPDDYRCCPCRSTTRFLRC-CSIS 343
F++ + DD CC C S+++ LRC CS S
Sbjct: 507 FYANHPADKDDDGCCSCSSSSKCLRCLCSSS 537
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 425 PEC-KACLMTIGAVRAALRPVFLGVAVFPN*FVVLRKPPPDGSSEC 291
P C + C + R A P LGV VF + +PPP G+S C
Sbjct: 333 PACLRRCRLVFPPARLAFMPPLLGVYVFTD---RPPRPPPTGASAC 375
>01_01_0381 - 2961422-2963917
Length = 831
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 514 ITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDY 627
+T D+ GR + +WLD + S+PKVQ + Y
Sbjct: 272 VTRNFIDVDGRNKQQVWLDSSQSWLTLYSNPKVQCDVY 309
>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
Length = 976
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 474 SCKNQEH*NAKH*NNIYNPRYNREDEGCTLARPRGYGS*RYLIT 605
+C +E + KH N+++ RY R GC P G+ ++L T
Sbjct: 597 NCHFEESYHLKHLGNLFHLRYLRLHCGCITKLPNEIGNLQFLQT 640
>01_05_0464 - 22470963-22472291
Length = 442
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 274 CGMNLLHSDDPSGG--GFLNTTNQ 339
C MN+++S DPSG G +N NQ
Sbjct: 269 CTMNMINSSDPSGSSIGDINVANQ 292
>01_01_0018 + 139150-140415
Length = 421
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 274 CGMNLLHSDDPSGG--GFLNTTNQ 339
C MN+++S DPSG G +N NQ
Sbjct: 269 CTMNMINSSDPSGSSIGDINVANQ 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,957,125
Number of Sequences: 37544
Number of extensions: 354356
Number of successful extensions: 931
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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