Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4k20
(735 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05249-1|AAA36560.1| 270|Homo sapiens protein ( Human replicati... 58 4e-08
DQ001128-1|AAX84514.1| 270|Homo sapiens replication protein A2,... 58 4e-08
CR450348-1|CAG29344.1| 270|Homo sapiens RPA2 protein. 58 4e-08
BC021257-1|AAH21257.1| 270|Homo sapiens replication protein A2,... 58 4e-08
BC012157-1|AAH12157.1| 270|Homo sapiens replication protein A2,... 58 4e-08
BC001630-1|AAH01630.1| 270|Homo sapiens replication protein A2,... 58 4e-08
AL109927-12|CAI21778.1| 278|Homo sapiens replication protein A2... 58 4e-08
AL109927-11|CAI21777.1| 270|Homo sapiens replication protein A2... 58 4e-08
AL109927-10|CAI21776.1| 179|Homo sapiens replication protein A2... 58 4e-08
AL109927-9|CAI21775.1| 358|Homo sapiens replication protein A2,... 58 4e-08
Z86061-1|CAI42256.1| 261|Homo sapiens replication protein A4, 3... 38 0.037
U24186-1|AAB08488.2| 261|Homo sapiens replication protein A com... 38 0.037
BC104014-1|AAI04015.1| 261|Homo sapiens replication protein A4,... 38 0.037
BC104013-1|AAI04014.1| 261|Homo sapiens replication protein A4,... 38 0.037
BC069824-1|AAH69824.1| 261|Homo sapiens replication protein A4,... 38 0.037
BC069808-1|AAH69808.1| 261|Homo sapiens replication protein A4,... 38 0.037
BC069791-1|AAH69791.1| 261|Homo sapiens replication protein A4,... 38 0.037
AF494047-1|AAM09569.1| 261|Homo sapiens replication protein A c... 38 0.037
>J05249-1|AAA36560.1| 270|Homo sapiens protein ( Human replication
protein A 32-kDa subunit mRNA, complete cds. ).
Length = 270
Score = 57.6 bits (133), Expect = 4e-08
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Frame = +1
Query: 313 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 477
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 478 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 654
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 655 NKGTKVLMAFKIMPVTDVNIITFHYFQ 735
+ K L+AFKIMP+ D+N T H +
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILE 161
>DQ001128-1|AAX84514.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 57.6 bits (133), Expect = 4e-08
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Frame = +1
Query: 313 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 477
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 478 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 654
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 655 NKGTKVLMAFKIMPVTDVNIITFHYFQ 735
+ K L+AFKIMP+ D+N T H +
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILE 161
>CR450348-1|CAG29344.1| 270|Homo sapiens RPA2 protein.
Length = 270
Score = 57.6 bits (133), Expect = 4e-08
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Frame = +1
Query: 313 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 477
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 478 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 654
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 655 NKGTKVLMAFKIMPVTDVNIITFHYFQ 735
+ K L+AFKIMP+ D+N T H +
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILE 161
>BC021257-1|AAH21257.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 57.6 bits (133), Expect = 4e-08
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Frame = +1
Query: 313 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 477
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 478 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 654
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 655 NKGTKVLMAFKIMPVTDVNIITFHYFQ 735
+ K L+AFKIMP+ D+N T H +
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILE 161
>BC012157-1|AAH12157.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 57.6 bits (133), Expect = 4e-08
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Frame = +1
Query: 313 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 477
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 478 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 654
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 655 NKGTKVLMAFKIMPVTDVNIITFHYFQ 735
+ K L+AFKIMP+ D+N T H +
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILE 161
>BC001630-1|AAH01630.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 57.6 bits (133), Expect = 4e-08
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Frame = +1
Query: 313 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 477
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 478 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 654
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 655 NKGTKVLMAFKIMPVTDVNIITFHYFQ 735
+ K L+AFKIMP+ D+N T H +
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILE 161
>AL109927-12|CAI21778.1| 278|Homo sapiens replication protein A2,
32kDa protein.
Length = 278
Score = 57.6 bits (133), Expect = 4e-08
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Frame = +1
Query: 313 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 477
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 26 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 85
Query: 478 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 654
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 86 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 142
Query: 655 NKGTKVLMAFKIMPVTDVNIITFHYFQ 735
+ K L+AFKIMP+ D+N T H +
Sbjct: 143 FQNKKSLVAFKIMPLEDMNEFTTHILE 169
>AL109927-11|CAI21777.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 57.6 bits (133), Expect = 4e-08
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Frame = +1
Query: 313 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 477
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 478 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 654
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 655 NKGTKVLMAFKIMPVTDVNIITFHYFQ 735
+ K L+AFKIMP+ D+N T H +
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILE 161
>AL109927-10|CAI21776.1| 179|Homo sapiens replication protein A2,
32kDa protein.
Length = 179
Score = 57.6 bits (133), Expect = 4e-08
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Frame = +1
Query: 313 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 477
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 22 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 81
Query: 478 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 654
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 82 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 138
Query: 655 NKGTKVLMAFKIMPVTDVNIITFHYFQ 735
+ K L+AFKIMP+ D+N T H +
Sbjct: 139 FQNKKSLVAFKIMPLEDMNEFTTHILE 165
>AL109927-9|CAI21775.1| 358|Homo sapiens replication protein A2,
32kDa protein.
Length = 358
Score = 57.6 bits (133), Expect = 4e-08
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Frame = +1
Query: 313 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 477
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 106 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 165
Query: 478 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 654
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 166 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 222
Query: 655 NKGTKVLMAFKIMPVTDVNIITFHYFQ 735
+ K L+AFKIMP+ D+N T H +
Sbjct: 223 FQNKKSLVAFKIMPLEDMNEFTTHILE 249
>Z86061-1|CAI42256.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 37.9 bits (84), Expect = 0.037
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 505 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 681
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 682 FKIMPVTDVNIITFHYFQ 735
KI + D+N T H +
Sbjct: 143 LKIHVLEDMNEFTVHILE 160
>U24186-1|AAB08488.2| 261|Homo sapiens replication protein A
complex 34 kd subunit homolog Rpa4 protein.
Length = 261
Score = 37.9 bits (84), Expect = 0.037
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 505 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 681
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 682 FKIMPVTDVNIITFHYFQ 735
KI + D+N T H +
Sbjct: 143 LKIHVLEDMNEFTVHILE 160
>BC104014-1|AAI04015.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 37.9 bits (84), Expect = 0.037
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 505 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 681
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 682 FKIMPVTDVNIITFHYFQ 735
KI + D+N T H +
Sbjct: 143 LKIHVLEDMNEFTVHILE 160
>BC104013-1|AAI04014.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 37.9 bits (84), Expect = 0.037
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 505 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 681
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 682 FKIMPVTDVNIITFHYFQ 735
KI + D+N T H +
Sbjct: 143 LKIHVLEDMNEFTVHILE 160
>BC069824-1|AAH69824.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 37.9 bits (84), Expect = 0.037
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 505 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 681
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 682 FKIMPVTDVNIITFHYFQ 735
KI + D+N T H +
Sbjct: 143 LKIHVLEDMNEFTVHILE 160
>BC069808-1|AAH69808.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 37.9 bits (84), Expect = 0.037
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 505 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 681
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 682 FKIMPVTDVNIITFHYFQ 735
KI + D+N T H +
Sbjct: 143 LKIHVLEDMNEFTVHILE 160
>BC069791-1|AAH69791.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 37.9 bits (84), Expect = 0.037
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 505 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 681
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 682 FKIMPVTDVNIITFHYFQ 735
KI + D+N T H +
Sbjct: 143 LKIHVLEDMNEFTVHILE 160
>AF494047-1|AAM09569.1| 261|Homo sapiens replication protein A
complex 34 kDa subunit RPA4 protein.
Length = 261
Score = 37.9 bits (84), Expect = 0.037
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 505 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 681
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 682 FKIMPVTDVNIITFHYFQ 735
KI + D+N T H +
Sbjct: 143 LKIHVLEDMNEFTVHILE 160
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,275,493
Number of Sequences: 237096
Number of extensions: 2082638
Number of successful extensions: 3826
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3826
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -