Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4k09
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 29 0.52
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 2.1
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 4.9
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 26 6.4
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 8.5
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 8.5
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.5
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 25 8.5
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 8.5
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 25 8.5
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 29.5 bits (63), Expect = 0.52
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -1
Query: 320 MDGSVVSMCVDNAFAYTTDDLLKNISFSHSKCAPFKLQNYTVLKRLSNGFIDKSVDV 150
MD ++ + +D +D+L +I K PF L+ ++ L+ G IDK + +
Sbjct: 249 MDQTIKDVMLDLLGTNPPEDVLNDIELKIYKIRPFNLEKCINMRDLNPGDIDKLISI 305
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 399 ATKRKIGDSSSDDNQPKRERVES 467
A+KRKI SSSDD++ K E S
Sbjct: 131 ASKRKIARSSSDDSESKVESTNS 153
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 403 LNARLAIRAATTTSQSGKEWK 465
LNA L +RA S SGK W+
Sbjct: 200 LNASLTVRAHQAASHSGKGWE 220
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 6.4
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Frame = +3
Query: 516 FNVKHDETGVMCYFTP--SSVQLE----PRELTKMLWQ-EQMAINVKRGNFSILNCSCFE 674
F + H+ + +F+ S +Q E R L +L EQ++ V + FS N
Sbjct: 354 FLINHEHMRLRVFFSSCCSKIQSEIYSTNRNLLSVLQTVEQISKEVDKEYFSSTNHQLIR 413
Query: 675 GRFLKNEFCRLANLNSLHEW 734
E+C+ ++NS EW
Sbjct: 414 SEI--GEYCKTLDINSCREW 431
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 529 CFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 374
C +L P+L + + +SP + +L+S + I R+ A L C C
Sbjct: 538 CPSLAVPPILTILASLQHTSPTQHKAVLEFLNSCINRCISRVFAYLDVCVDC 589
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 212 LQNYTVLKRLSNGFIDKSVDVGSISELQKFNFKINRLTSYISNI 81
L N T L N F+ + + +S+L+ NF N L+ S I
Sbjct: 524 LVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKI 567
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 204 LHRFEAVEQRVYRQVC 157
LH FE RVY Q+C
Sbjct: 180 LHDFETTSNRVYSQIC 195
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 492 YNNNNGAAFNVKHDETG--VMCYFTPSSVQLE 581
++NN+ N+KH E G + Y TP +LE
Sbjct: 61 FHNNHSVILNIKHPELGEPLKPYQTPLPPELE 92
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 97 LVSRFILKLNFCNSLIEPTSTDLSINPLLNRFKTV*FCSLKGAHLE*LKEIFF 255
LV +++L FC S+++ ++++NP ++ + C L LK++ F
Sbjct: 268 LVYKWVLNF-FCKSVVKQAEAEVAVNP-ISAYPLAKVCLLLQTQNADLKDLLF 318
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 620 HLLLPQHLCQLAWLQLNGRRR 558
H+++PQ Q +W+ +GR R
Sbjct: 330 HVVIPQDAQQSSWISFDGRNR 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,773
Number of Sequences: 5004
Number of extensions: 58257
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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