Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4k09
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0222 + 26510472-26511698                                         32   0.41 
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298...    30   2.2  
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    29   5.1  
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514...    29   5.1  
01_07_0379 + 43177978-43178572,43178643-43178674                       29   5.1  
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    28   6.7  

>05_06_0222 + 26510472-26511698
          Length = 408

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -1

Query: 446 WLVVVAARIANLAFSCHATDVRCLLWFKSN*SVSQNIRYIINMDGSVVSMCVDNAFAYTT 267
           WL++       L FSC  ++ R   +F    S ++  RY  + DG+ + + VD   A   
Sbjct: 62  WLLLPETNEHGLTFSCVLSECRAHRFFLP--SGARRARYFGSYDGAWLFLAVDGRGAQAQ 119

Query: 266 DDLLKNIS 243
           D LL N++
Sbjct: 120 DHLLVNLN 127


>06_02_0325 +
           14428065-14428799,14428916-14428993,14429607-14429844,
           14431199-14431296,14431770-14432063,14432418-14432702
          Length = 575

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/106 (17%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
 Frame = -1

Query: 320 MDGSVVSMCVDNAFAY-TTDDLLKNISFSHSKCAPFKLQ-NYTV--LKRLSNGFIDKSVD 153
           MD   +   ++    Y  ++D+ K++ F    C  +  + +Y +  +KR+  GF+   + 
Sbjct: 281 MDFGTICQNLERGDKYMNSEDVYKDVQFIWDNCTKYNSKGDYIIELMKRVKKGFMKNWLA 340

Query: 152 VGSISELQKFNFKINRLTSYISNIFEYEFVVLEHNLSTVHVINAET 15
            G  S++Q+   +  +    I  + E +   +  N+S   ++  ++
Sbjct: 341 AGLYSDVQENVTRRKKEKDEILAVIENDTAAVNSNISDQQIMEVDS 386


>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
            3973665-3973982,3974565-3974763,3974937-3975202,
            3975288-3975574,3976714-3977818,3977900-3978046,
            3978146-3978226,3978315-3978540,3978622-3978761,
            3979539-3979645,3979739-3979841
          Length = 3638

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 61   TTNSYSKMFDM*LVSRFILKLNFCNSLIEPTSTDLSIN 174
            T  SY K+ +  + S F+L  +    L++P  T+LSIN
Sbjct: 1092 TLQSYCKLLEYCVNSSFLLSPSHNQLLVQPMVTELSIN 1129


>03_03_0025 +
           13848450-13849420,13850921-13851131,13851327-13851459,
           13851576-13851832
          Length = 523

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 367 NHSRQRTSVAWQLNARLAIRAATTTSQSGKEWKVVRTSSW 486
           +H R  +S +   +ARL  R A  TS SG+ W+ V  + W
Sbjct: 174 HHRRNSSSSSSSASARLVTRPAAATSGSGR-WRSVFGAVW 212


>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 529 CFTLKAAPLLLLYG-TSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 374
           C+    AP +L YG  SC +  L  L R     ++L   +L L+ +  +CA C
Sbjct: 112 CYRWSNAPGVLCYGCDSCKAGVLEQLRRHWHNVTILNVVLLLLLILFYSCACC 164


>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 624 INVKRGNFSILNCSCFEGRFLKNEFC 701
           + + +      +CSC+ G ++KN FC
Sbjct: 72  MGICKNTIGSFDCSCYPGSYMKNGFC 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,896,336
Number of Sequences: 37544
Number of extensions: 339982
Number of successful extensions: 1008
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)