Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4k09
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z81513-12|CAE17799.1|  417|Caenorhabditis elegans Hypothetical p...    28   7.9  

>U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical
           protein T05E8.1 protein.
          Length = 893

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 405 KRKIGDSSSDDNQPKRERVESGEDQQ 482
           K K GDSSSDD+ P+R+R E   D +
Sbjct: 13  KFKRGDSSSDDSGPERDRDEDDSDNE 38


>Z81513-12|CAE17799.1|  417|Caenorhabditis elegans Hypothetical
           protein F26D2.16 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 263 DLLKNISFSHSKCAPFKLQNYTVLKRLSNGFIDKSV--DVGSISELQKFNFKINRLTSYI 90
           D L +  FS+  C    +    V++ + N  + K+V  DV SIS+   F     R+T  +
Sbjct: 318 DRLLSYKFSYKGCGRM-VSKEEVIEHIINLPLRKNVELDVKSISDSPSFYLIRMRITGLL 376

Query: 89  SNIFEYEFVV 60
           S  FE  F V
Sbjct: 377 SKPFEISFKV 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,119,860
Number of Sequences: 27780
Number of extensions: 324082
Number of successful extensions: 938
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)