Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4k04
         (546 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   4.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   4.0  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.3  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 542 RPSAGPNAEPPRCVLPRPSPGMPFSDRNSS 453
           RP + P+A+  + V   P PG    ++++S
Sbjct: 414 RPPSTPSADGSKPVQTTPKPGQWVPEKSTS 443


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 247 DDYPLINGNDFLSHGASFXKKYGKSVNTKETLEDKKDDNDLW 372
           ++YP  +  D+LS       ++G   N  ET   K  D   W
Sbjct: 254 NNYPYYSNMDYLSSSTMSHSQFG---NGLETSWGKSRDESSW 292


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -2

Query: 542 RPSAGPNAEPPRCVLPRPSPGMPFSDRNSSRSTY 441
           RPS+G +    R   P    G P ++    R+ +
Sbjct: 202 RPSSGRSPRTRRVKKPGAKQGAPTAEEKRPRTAF 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,999
Number of Sequences: 336
Number of extensions: 2114
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)