Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4k04
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 32 0.063
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 31 0.11
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 2.4
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 2.4
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 2.4
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 5.5
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 7.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 7.3
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 25 9.6
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 9.6
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 31.9 bits (69), Expect = 0.063
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 187 DRSSPSLTDTPL---KTYIGRHDDDYPLINGNDFLSHGASFXKKYGKSVNTKETLEDKKD 357
D ++P + ++P ++ + D P DF+ S K++G ++N + +ED D
Sbjct: 43 DTNNPGMNESPKILDSSFENSNPQDGPNYEDFDFMG---SIHKEFGNNINEMDDMEDVSD 99
Query: 358 DNDLWEAQA 384
DN E QA
Sbjct: 100 DNLPEEEQA 108
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 31.1 bits (67), Expect = 0.11
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 265 NGNDFLSHGASFXKKYGKSVNTKETLEDKKDDNDLWEA--QAAFLGPNLWDKTLPYDPDL 438
N S S K S+NT ETLE N++ E+ Q ++W+KT+ P L
Sbjct: 948 NNEQAQSISRSLIKDSEGSINTNETLESTSIVNEIEESAVQTKSYSESMWNKTVTMFPSL 1007
Query: 439 KYVDLDEFLSE 471
+ + ++SE
Sbjct: 1008 QELP-QNYMSE 1017
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 161 NTGLRLDTRTLSGRRAGPAHT 99
NTG +LD G R GP HT
Sbjct: 1677 NTGAKLDRSLSLGSRRGPGHT 1697
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 171 NHL*HRA*TRYENTIGETRRPRTHSSTTDLRPAARAAIKYSKLVDVAPRSASLA 10
NHL H + TR+E+ ++R+ R + + L R I + + P SLA
Sbjct: 396 NHLSHMSITRFEDKTKKSRQYRYFTLQSQLNRLIRDGIPAETISKLLPHVHSLA 449
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 337 TLEDKKDDNDLWEAQAAFLGPNLWDK-TLPYDPDLKYVDL 453
+LE KK+D D W ++ A+LG L K Y D K+V L
Sbjct: 5 SLEVKKNDKDPW-SKTAYLGGRLVSKIPAVYSNDNKFVFL 43
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 202 SLTDTPLKTYIGRHDDDYPLI 264
SL +TP+K GR + YPLI
Sbjct: 697 SLLNTPVKILFGRTEYTYPLI 717
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 283 SHGASFXKKYGKSVNTKETLEDKKDDNDLWEAQAAFLGPNLWDKTLPY 426
S A+F + KS++ + T+ K NDL A L NLW ++LP+
Sbjct: 619 SKSANFDFSFLKSLDLQPTITLGK--NDLLNA---ILSQNLWFRSLPF 661
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 147 SKPGVISDYYERQGQVVALPHGHPAEDVHRSTRRRLPL 260
+KPG I + + G +AL H H + + R + P+
Sbjct: 29 AKPGDIFEIRAQNGDEIALQHNHSSTGKLHAKREKEPV 66
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 430 PDLKYVDLDEFLSENGMPGEGLGSTHLGGSA 522
PDL DL E+L G+P + H+ GSA
Sbjct: 367 PDLLATDLAEYLVRKGLPFR--QTHHISGSA 395
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 539 PSAGPNAEPPRCVLPRPSPGMPFSDR 462
P+A P+ PPR +P P PG S +
Sbjct: 581 PNASPSVIPPR--VPTPVPGRTLSPK 604
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.138 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,927
Number of Sequences: 5004
Number of extensions: 34408
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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