Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4k04
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0032 + 17363039-17363436,17363626-17363936,17364058-173641... 32 0.34
07_01_1113 - 10292781-10293299 31 0.45
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 29 1.8
11_04_0344 - 16590803-16591433,16591598-16591914,16592300-165923... 28 4.2
06_02_0192 + 12872611-12872979 28 5.6
05_07_0278 + 28911722-28911934,28912154-28913055,28913142-289135... 28 5.6
04_04_1608 - 34753321-34753332,34753434-34753628,34753868-347539... 27 7.4
01_05_0182 + 18989094-18989152,18989211-18989512,18990121-18991028 27 7.4
10_08_0958 - 21804938-21805729,21805896-21806006,21806227-218064... 27 9.8
10_08_0591 + 19042704-19043063,19043171-19043311,19043592-190435... 27 9.8
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 27 9.8
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 27 9.8
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 27 9.8
05_03_0394 - 13440871-13441098,13441197-13441394,13441491-134415... 27 9.8
>05_04_0032 +
17363039-17363436,17363626-17363936,17364058-17364120,
17364697-17365181,17365772-17366122
Length = 535
Score = 31.9 bits (69), Expect = 0.34
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -2
Query: 161 NTGLRLDTRTLSGRRAGPAHTRA-RPTSGPRLARRLNTPSSWTSLRARPRWRC 6
+T +D + GP T A R +S PR+ RR + W + WRC
Sbjct: 100 DTKSEMDGMEVDSPFLGPTRTGADRASSAPRMVRRRQVTAEWRKIVGPIMWRC 152
>07_01_1113 - 10292781-10293299
Length = 172
Score = 31.5 bits (68), Expect = 0.45
Identities = 24/54 (44%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 60 SPREPRAGGRSCSSVCGA--GASPR*CSRIESKPGVISDYYERQGQVVALPHGH 215
SP PRA RSCSSV A G PR +R S PG + Q V L H H
Sbjct: 79 SPSSPRAQPRSCSSVDAATKGNPPR-SARTTSAPGSLRLPEVAQRVVELLHHRH 131
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = -2
Query: 236 PMYVFSGVSVREGDDLSL-SLIIITYN----TGLRLDTRTLSGRRAGPAH 102
P+Y+FSG S + GD+ SL S++ + +N +G + + +S R A AH
Sbjct: 488 PLYIFSGTSDQVGDEYSLVSVVKMGFNERRISGRKQEFSYISLRNAQSAH 537
>11_04_0344 -
16590803-16591433,16591598-16591914,16592300-16592395,
16592505-16592540
Length = 359
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 129 IGETRRPRTHSSTTDLRPAARAAIKYSKLVDVAPRSA 19
+ + RR +T SST PAA A ++ S+++D+ R A
Sbjct: 114 VEQQRRLQTSSSTARGAPAAGARLEASRMLDMLARKA 150
>06_02_0192 + 12872611-12872979
Length = 122
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -3
Query: 541 DPAPARTRSRPGACCPGP--RXACRSXTGTHLGPR---T*DRGRRAGSCPTGW 398
D AP +R RP A GP R + R +GT R T DRG R G+ GW
Sbjct: 46 DLAPTTSR-RPPATTTGPHGRRSGRRSSGTKKIRRRSPTSDRGGRGGAVARGW 97
>05_07_0278 +
28911722-28911934,28912154-28913055,28913142-28913581,
28913628-28913955,28914101-28914743
Length = 841
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 376 AQAAFLGPNLWDKTLPYDPDLKYVDLDE 459
A A G WD T Y+ D +YVDLD+
Sbjct: 554 ASGAGAGGFRWDVTTIYNVDRRYVDLDK 581
>04_04_1608 -
34753321-34753332,34753434-34753628,34753868-34753972,
34754176-34754219,34754645-34754700,34755986-34756146
Length = 190
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 388 FLGPNLWDKTLPYDPDLKYVDLDEFLSENGMPGEGLGSTHLGGSAFGPALGL 543
FL N W++ P DP K+ + +F+ N E +G + + LG+
Sbjct: 80 FLNSN-WEEDFPDDPSGKFEEFKDFIRSNFEICEWIGLSVVAAQVLSIVLGM 130
>01_05_0182 + 18989094-18989152,18989211-18989512,18990121-18991028
Length = 422
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 201 LPHGHPAEDVHRSTRRRLPLNQ 266
LPHGH A D RSTR L ++
Sbjct: 101 LPHGHDAMDDDRSTRLMLKFSE 122
>10_08_0958 -
21804938-21805729,21805896-21806006,21806227-21806437,
21807390-21807910
Length = 544
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 539 PSAGPNAEPPRCVLPRPSPG 480
PS+ PP CV+P P+PG
Sbjct: 17 PSSKREDAPPCCVVPMPAPG 36
>10_08_0591 +
19042704-19043063,19043171-19043311,19043592-19043597,
19043652-19043747,19044618-19044698,19045210-19045296,
19045612-19045667,19045866-19045902
Length = 287
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -3
Query: 532 PARTRSRPGACCPGPRXACRSXTGTHLGPRT*DRGRRAGS 413
P S P A P P AC S G L P+ + RRA +
Sbjct: 12 PISPPSPPPAQTPPPLLACNSVNGVRLRPQRSRQPRRAAA 51
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 316 KSVNTKETLEDKKDDNDLWEAQAAFLGPNLWDKTLP 423
K VN +E+ E +DD Q+A L N+ D T+P
Sbjct: 563 KDVNEEESEETPEDDEKGHALQSASLVMNMLDATMP 598
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 27.1 bits (57), Expect = 9.8
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Frame = +3
Query: 81 GGRSCSSVCGAGASPR*CSRIESKPGVISDYYERQGQVVALPHG----HPAEDVHRSTRR 248
GG ++ GAGA P C +E V D A HG P + + +
Sbjct: 67 GGGGAAAGAGAGAHPLHCRALELCFSVALDRLPAAAAAAAAAHGAGASPPVSNALVAALK 126
Query: 249 RLPLNQRKRFPES 287
R QR+ PE+
Sbjct: 127 RAQAQQRRGCPEA 139
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 110 PAHTRARPTSGPRLARRLNTPSSWTSLRARPR 15
P RAR +S PR A ++ S RARPR
Sbjct: 239 PPRRRARSSSSPRRATAFKAYNAALSPRARPR 270
>05_03_0394 -
13440871-13441098,13441197-13441394,13441491-13441594,
13441687-13442551,13442677-13443045,13443372-13443533,
13443838-13444056,13444138-13444656,13444742-13444819,
13446041-13446163
Length = 954
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 201 LPHGHPAEDVHRSTRRRLPLNQRKRFPESRG*FXQKVRQVRQH*GDARRQEG 356
LPHG A +++R RR+ ++ K ++ + VRQ+ + D + ++G
Sbjct: 423 LPHGQCAVELYREQRRKTSISHDKLLLKTAN---EAVRQLWMNLSDCKSEQG 471
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.138 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,130,674
Number of Sequences: 37544
Number of extensions: 311467
Number of successful extensions: 1028
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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