Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4k04
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical pr...    32   0.31 
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    31   0.41 
AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical ...    31   0.41 
Z81539-2|CAB04390.1|  221|Caenorhabditis elegans Hypothetical pr...    29   2.2  

>Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical
           protein F18H3.3b protein.
          Length = 566

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 210 GHPAEDVHRSTR-RRLPLNQRKRFPESRG*FXQKVRQVRQH*GDARRQEG*QRPLGGAGR 386
           G P + V ++    + P NQR+ +P+ +G    +    R   G A R  G  R +GG G 
Sbjct: 485 GPPGQRVFQNQMFMQYPFNQRQVYPQQQGRPPMRTNDGRPQYGMAPRPAGAPR-VGGPGV 543

Query: 387 LLGSQPVGQD 416
            +G  P+ Q+
Sbjct: 544 QMGGAPIRQN 553


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 210 GHPAEDVHRSTR-RRLPLNQRKRFPESRG*FXQKVRQVRQH*GDARRQEG*QRPLGGAGR 386
           G P + V ++    + P NQR+ +P+ +G    +    R   G A R  G  R +GG G 
Sbjct: 485 GPPGQRVFQNQMFMQYPFNQRQVYPQQQGRPPMRTNDGRPQYGMAPRPAGAPR-VGGPGV 543

Query: 387 LLGSQPVGQ 413
            +G  P+ Q
Sbjct: 544 QMGGAPIRQ 552


>AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical
           protein Y47H10A.1 protein.
          Length = 702

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
 Frame = +1

Query: 244 DDDYPLINGN-DFLSH--GASFX-----KKYGKSVNTKETLEDKKDDNDLWEAQAAFLG 396
           DD  P +NG   ++S   G+ F      K Y K + T E L D   +  LW+A A+F G
Sbjct: 320 DDRLPTVNGTLCYMSSPGGSEFWGPLLEKAYAKLLGTYEHLNDPYTEQALWQASASFTG 378


>Z81539-2|CAB04390.1|  221|Caenorhabditis elegans Hypothetical
           protein F46A8.4 protein.
          Length = 221

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 128 SGRRAGPAHTRARPTSGPRLARRLNTP 48
           SGRR G  H   RP   PR +R ++TP
Sbjct: 42  SGRRGGGRHRPPRPPRPPRPSRPVSTP 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,694,864
Number of Sequences: 27780
Number of extensions: 223834
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)