Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j24
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    27   2.9  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   3.9  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.1  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    26   5.1  

>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 498 SVGMNPRNGMIVNANGTDAGLATCDVRRIMNHRHH 602
           SV  NP N  I+    TD  +A  D+R  +N R H
Sbjct: 286 SVAFNPHNDFILATCSTDKTIALWDLRN-LNQRLH 319


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
            Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 163  ILVGNITHITTKRYVFLGTLLQKYLKHSLQ*ILH 62
            +L   IT  T + Y+F+G +  + LKH +   +H
Sbjct: 1019 MLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMH 1052


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +2

Query: 131 GSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQGEES 292
           G+ ++N T    +    Q  G DL+P +   T  Y     RR      D  EES
Sbjct: 415 GNIVTNGTGLRSSQSSSQNRGFDLEPYSEVFTASYPRRQARRTRTIQLDSDEES 468


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 212 APKSTGRYIPPHLRRQLQATSDQG 283
           AP + G++IPP + ++L    D G
Sbjct: 189 APVNAGKFIPPGVGKRLATVDDSG 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,309
Number of Sequences: 5004
Number of extensions: 40438
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)