Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j24
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0767 + 22986313-22986422,22986968-22987316                       34   0.080
12_02_1211 - 27033927-27034029,27034130-27034273,27034358-270344...    30   1.7  
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026...    28   7.0  
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     27   9.2  

>12_02_0767 + 22986313-22986422,22986968-22987316
          Length = 152

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 QLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQGEESKRSSLDTRPS 322
           +L+G+D+ P  P ++   IP H  R+    +D GE+SK      +PS
Sbjct: 72  RLSGIDMMPPPPSTS---IPSHQERERNMAADGGEKSKEIDTPEKPS 115


>12_02_1211 -
           27033927-27034029,27034130-27034273,27034358-27034439,
           27034536-27034690,27034865-27034945,27035397-27035458,
           27035966-27036034,27036807-27036867,27037560-27037816
          Length = 337

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +2

Query: 119 NVPLGSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQGEES 292
           ++P  S+ S+ ++   T      A L L+   P S+GR IPP LR    ++S QG  S
Sbjct: 23  SIPASSSSSSSSSSTTTAA----ASLPLRAAVPPSSGRRIPP-LRCASSSSSSQGSAS 75


>07_03_0814 +
           21700274-21701923,21702282-21702434,21702563-21702634,
           21702923-21703033
          Length = 661

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 613 AVIPWCRWFIILLTSHVARPASVPFAFTIIPFL 515
           A +P   W   LL    A  AS+P AF ++PFL
Sbjct: 72  AAVPAREWHA-LLRELAATDASLPLAFALLPFL 103


>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 200 LQPQAPKSTGRYIPPHL 250
           L PQAP+   R+ PPHL
Sbjct: 270 LWPQAPRQQARFSPPHL 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,374,820
Number of Sequences: 37544
Number of extensions: 306927
Number of successful extensions: 927
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)