Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j24
         (627 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    32   0.013
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              30   0.052
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    25   2.0  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    25   2.0  

>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 32.3 bits (70), Expect = 0.013
 Identities = 20/74 (27%), Positives = 32/74 (43%)
 Frame = +2

Query: 104 QSSQKNVPLGSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQG 283
           Q  Q+  P     + V     +  ++QL     Q Q  +   RY+PP LR+Q Q    Q 
Sbjct: 408 QQQQQQQPQQLLWTTVVRSCPSQRQRQLQQQQQQQQQQQQGERYVPPQLRQQRQQQQPQQ 467

Query: 284 EESKRSSLDTRPSE 325
           ++ +R     RP +
Sbjct: 468 QQQQRPQ-QQRPQQ 480



 Score = 27.1 bits (57), Expect = 0.49
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 203 QPQAPKSTGRYIPPHLRRQLQATSDQGEESKR 298
           Q Q  +   RY+PP LR+Q Q    Q ++ ++
Sbjct: 287 QQQQQQQGERYVPPQLRQQRQQQQHQQQQQQQ 318



 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 203 QPQAPKSTGRYIPPHLRRQLQ 265
           Q Q  +   RY+PP LR+Q Q
Sbjct: 254 QQQQQQQGERYVPPQLRQQRQ 274


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 0.052
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 203 QPQAPKS-TGRYIPPHLRRQLQATSDQGEESK 295
           QPQ  +  TGRY PP +R+QLQ    Q +  +
Sbjct: 328 QPQQQQQQTGRYQPPQMRQQLQQQQQQRQPQR 359


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 222 LLGAWGCKSRPASCCSRPVPFWLVTLLI 139
           ++G WG  S    CC++P   +   L +
Sbjct: 543 IIGKWGIISTAQKCCNKPCNIFQAVLSV 570


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 176 EQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQGEESKRSSLD 310
           +QQL     Q Q  +   RY+PP LR+Q      + ++  R   D
Sbjct: 270 QQQLQRRQQQQQQHQGQ-RYVPPQLRQQAHQQQQRQQQKVRPRPD 313


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,146
Number of Sequences: 2352
Number of extensions: 11207
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)