Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j24
         (627 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089613-1|AAL90351.1|  798|Drosophila melanogaster RE28061p pro...    44   1e-04
AE014297-778|AAF54262.1|  798|Drosophila melanogaster CG9748-PA ...    44   1e-04
BT023149-1|AAY55565.1|   83|Drosophila melanogaster IP03510p pro...    29   6.8  

>AY089613-1|AAL90351.1|  798|Drosophila melanogaster RE28061p
           protein.
          Length = 798

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 27/52 (51%), Positives = 31/52 (59%), Gaps = 14/52 (26%)
 Frame = +2

Query: 140 MSNVTNQNGTGLEQQLAGLDLQ--------PQAPKST------GRYIPPHLR 253
           MSN  NQNGTGLEQQ+AGLDL         P   K++      G Y+PPHLR
Sbjct: 1   MSNAINQNGTGLEQQVAGLDLNGGSADYSGPITSKTSTNSVTGGVYVPPHLR 52


>AE014297-778|AAF54262.1|  798|Drosophila melanogaster CG9748-PA
           protein.
          Length = 798

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 27/52 (51%), Positives = 31/52 (59%), Gaps = 14/52 (26%)
 Frame = +2

Query: 140 MSNVTNQNGTGLEQQLAGLDLQ--------PQAPKST------GRYIPPHLR 253
           MSN  NQNGTGLEQQ+AGLDL         P   K++      G Y+PPHLR
Sbjct: 1   MSNAINQNGTGLEQQVAGLDLNGGSADYSGPITSKTSTNSVTGGVYVPPHLR 52


>BT023149-1|AAY55565.1|   83|Drosophila melanogaster IP03510p
          protein.
          Length = 83

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 24 KLSLSCGFVNLCLCKIHC 77
          KLS+SC +V +C+ + HC
Sbjct: 28 KLSISCSYVCVCILRTHC 45


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,987,763
Number of Sequences: 53049
Number of extensions: 498735
Number of successful extensions: 1601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)