Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4j24
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83235-2|CAB05773.2| 265|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF456248-1|AAL59606.1| 265|Caenorhabditis elegans secreted 2-im... 29 3.6
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 28 6.3
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z66496-3|CAA91279.2| 570|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr... 27 8.3
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 27 8.3
L16559-5|AAA27932.2| 365|Caenorhabditis elegans Hypothetical pr... 27 8.3
AC024821-5|AAF60784.1| 337|Caenorhabditis elegans Hypothetical ... 27 8.3
>Z83235-2|CAB05773.2| 265|Caenorhabditis elegans Hypothetical
protein K10C3.3 protein.
Length = 265
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 483 MANHQSVGMNPRNGMIVNANGTDAGLATCD 572
+A QSV M ++ NAN TDAG +C+
Sbjct: 174 LALSQSVSMEGSTVIVTNANYTDAGTYSCE 203
>AF456248-1|AAL59606.1| 265|Caenorhabditis elegans secreted
2-immunoglobulin-domainprotein ZIG-1 protein.
Length = 265
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 483 MANHQSVGMNPRNGMIVNANGTDAGLATCD 572
+A QSV M ++ NAN TDAG +C+
Sbjct: 174 LALSQSVSMEGSTVIVTNANYTDAGTYSCE 203
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 207 GCKSRPASCCSRPVPFWLVTL 145
GC+ +P +CC+ P P L T+
Sbjct: 637 GCQPQPQNCCAPPAPCCLPTI 657
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 207 GCKSRPASCCSRPVPFWLVTL 145
GC+ +P +CC+ P P L T+
Sbjct: 282 GCQPQPQNCCAPPAPCCLPTI 302
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 207 GCKSRPASCCSRPVPFWLVTL 145
GC+ +P +CC+ P P L T+
Sbjct: 234 GCQPQPQNCCAPPAPCCLPTI 254
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
K08E7.5a protein.
Length = 1221
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 207 GCKSRPASCCSRPVPFWLVTL 145
GC+ +P +CC+ P P L T+
Sbjct: 962 GCQPQPQNCCAPPAPCCLPTI 982
>Z66496-3|CAA91279.2| 570|Caenorhabditis elegans Hypothetical
protein E04D5.1a protein.
Length = 570
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 212 APKSTGRYIPPHLRRQLQATSDQGEES 292
A + G YIPPHLR+ L G S
Sbjct: 459 AVRQAGAYIPPHLRKPLGGGGSAGPPS 485
>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical
protein F40F11.2b protein.
Length = 1607
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 95 FLEQSSQKNVPLGSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATS 274
++ Q N P G++ S + +Q G + Q + QP PK+T + PP + QA
Sbjct: 170 YMPQIDHMN-PSGNSSSQINHQQGMIVPQ----VQQQPAKPKTTKKRPPPKKKTAAQAPD 224
Query: 275 DQG 283
G
Sbjct: 225 TVG 227
>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical
protein F40F11.2a protein.
Length = 1593
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 95 FLEQSSQKNVPLGSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATS 274
++ Q N P G++ S + +Q G + Q + QP PK+T + PP + QA
Sbjct: 156 YMPQIDHMN-PSGNSSSQINHQQGMIVPQ----VQQQPAKPKTTKKRPPPKKKTAAQAPD 210
Query: 275 DQG 283
G
Sbjct: 211 TVG 213
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 563 REARVGPVRVHDHSISRIHS 504
+EAR G V++ DH IS +HS
Sbjct: 1587 KEARQGTVQLDDHKISFVHS 1606
>L16559-5|AAA27932.2| 365|Caenorhabditis elegans Hypothetical
protein C06E1.7 protein.
Length = 365
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 144 LILLPSGTFFWELCSKNI*NTVYNEFCTNTNSQNHKK 34
LI PS TF W L + VY + +TN N+KK
Sbjct: 301 LITAPSSTFGWWLGYLSKGQAVYYQDIRSTNDVNYKK 337
>AC024821-5|AAF60784.1| 337|Caenorhabditis elegans Hypothetical
protein Y55B1AR.4 protein.
Length = 337
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +2
Query: 218 KSTG---RYIPPHLRRQLQATSDQGEESKRSSLDT 313
K+TG +Y+PPHLR + ++ + + ++ + DT
Sbjct: 54 KATGNAPKYLPPHLRNRQESENKEEDDESECNSDT 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,450,080
Number of Sequences: 27780
Number of extensions: 240640
Number of successful extensions: 746
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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