Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j22
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    27   0.16 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.8  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   7.7  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 628 WK*ILL*YHFW--FFNVKMYYICMQCSNKV 711
           W  ++L   FW  FF V + YIC QC N V
Sbjct: 266 WDRVML-LTFWSAFFIVNVLYICNQCYNTV 294


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 364 NFKCAYASYCFGKFWSNIVWES 429
           N    Y  Y FGKF   ++ +S
Sbjct: 138 NISATYICYAFGKFSCKVMIQS 159


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 364 NFKCAYASYCFGKFWSNIVWES 429
           N    Y  Y FGKF   ++ +S
Sbjct: 371 NISATYICYAFGKFSCKVMIQS 392


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 364 NFKCAYASYCFGKFWSNIVWES 429
           N    Y  Y FGKF   ++ +S
Sbjct: 371 NISATYICYAFGKFSCKVMIQS 392


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 611 NYENIIGNKSYYSIIFGFLMLKCIIYVCSVLI 706
           NY +I      ++ I+G  ML+ II V + ++
Sbjct: 225 NYNSICELVDAFNNIYGLAMLEIIIVVITYVL 256


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,944
Number of Sequences: 336
Number of extensions: 3142
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)