Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j22
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66523-6|CAA91415.1|  161|Caenorhabditis elegans Hypothetical pr...    33   0.28 
Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical p...    30   1.5  
AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear recep...    30   1.5  
AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear recep...    30   1.5  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   4.5  
Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    28   7.9  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      28   7.9  
AF016443-10|AAC24276.4|  325|Caenorhabditis elegans Serpentine r...    28   7.9  

>Z66523-6|CAA91415.1|  161|Caenorhabditis elegans Hypothetical
           protein M05D6.6 protein.
          Length = 161

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 245 PTEFQKTILVWTKKYKNKSEVPPFVSAEIIERSKSEARI 361
           PT++Q+  LV TK Y + +++PP+V    + R     R+
Sbjct: 85  PTKWQRKFLVITKLYPSAADIPPYVHHGTMNRMHDRMRV 123


>Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical
           protein K06B4.11 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 475 PVKIHLMNRFPSLSSSFPRQYCSKTCQSSKKH 380
           P   HL+N F S SS  P  YC   C+ +  H
Sbjct: 2   PSPTHLLNNFESSSSQGPPSYCLICCEVADGH 33


>AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 475 PVKIHLMNRFPSLSSSFPRQYCSKTCQSSKKH 380
           P   HL+N F S SS  P  YC   C+ +  H
Sbjct: 3   PSPTHLLNNFESSSSQGPPSYCLICCEVADGH 34


>AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 366

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 475 PVKIHLMNRFPSLSSSFPRQYCSKTCQSSKKH 380
           P   HL+N F S SS  P  YC   C+ +  H
Sbjct: 4   PSPTHLLNNFESSSSQGPPSYCLICCEVADGH 35


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 299  SEVPPFVSAEIIERSKSEARIKISNVLMLLTALASFGAILSGKAAAKRG 445
            S++ PF+   I +    + R   +NVLMLL+++   G    G+  A+ G
Sbjct: 1082 SDMKPFMMTLIKDYLSEDVRFSTNNVLMLLSSIHPIGTSF-GRVTAESG 1129


>Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical
           protein F37A8.2 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 161 ETGDIAQKTFCTLFRVYISFNHRLI 87
           ET D + +T C+L    +SFNHR++
Sbjct: 250 ETSDSSSETNCSLSSGTVSFNHRML 274


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
 Frame = +2

Query: 239 FRPTEFQKTILVWTKKYKNKSEVPPFVSAEIIERSKSEARIKISNVLMLLTALASFGAIL 418
           F P+ F+   +VW  + K   E        +    + E    ++N  +L    A  G   
Sbjct: 14  FHPSAFRNLKMVWEARQKKSLEDKRQEELRVAYEKEQEI---LNNKALLGDEKAKMGLSF 70

Query: 419 SGKAAA---KRGESVHQMNLDWHKKYQEEHKE 505
              A A   KR E   +   +W +KYQ   ++
Sbjct: 71  MYDAPAGMTKREEPKEEPKFEWQRKYQAPRED 102


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
 Frame = +2

Query: 239 FRPTEFQKTILVWTKKYKNKSEVPPFVSAEIIERSKSEARIKISNVLMLLTALASFGAIL 418
           F P+ F+   +VW  + K   E        +    + E    ++N  +L    A  G   
Sbjct: 14  FHPSAFRNLKMVWEARQKKSLEDKRQEELRVAYEKEQEI---LNNKALLGDEKAKMGLSF 70

Query: 419 SGKAAA---KRGESVHQMNLDWHKKYQEEHKE 505
              A A   KR E   +   +W +KYQ   ++
Sbjct: 71  MYDAPAGMTKREEPKEEPKFEWQRKYQAPRED 102


>AF016443-10|AAC24276.4|  325|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 9 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 617 ENIIGNKSYYSIIFGFLMLKCIIYVCSVLIKYDL 718
           ENI   K++ +I+F       I+ VC +L  YD+
Sbjct: 210 ENIKTAKTFNNIVFSIGFFNTIVNVCLILDNYDI 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,720,965
Number of Sequences: 27780
Number of extensions: 279964
Number of successful extensions: 675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)