Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j21
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0178 + 6195402-6199158,6199438-6200003                           31   1.2  
04_04_1090 - 30764340-30764704,30765092-30765204,30765414-307656...    30   2.1  
05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435...    29   4.9  
12_01_0441 + 3484003-3484374,3485071-3485151,3485242-3485514,348...    28   6.5  
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590...    28   8.6  

>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
 Frame = +2

Query: 260 SESLELPVAEQPSPSSAY--NAESFEQSVG-------VNQPSAAGTKRKLDEY 391
           SESL+L    Q  PSS++  N+E F  SV        V+ PS + T++ LD Y
Sbjct: 799 SESLDLATCSQMLPSSSFRTNSEGFTGSVSLTNSQTFVHNPSCSLTQQSLDNY 851


>04_04_1090 -
           30764340-30764704,30765092-30765204,30765414-30765638,
           30766432-30766553,30766617-30767174,30769207-30769477,
           30772175-30773256
          Length = 911

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
 Frame = +2

Query: 56  DKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLG 235
           +K+  +  L   + PTP   D + +   TAA S+ +A+V      N  +  L+      G
Sbjct: 445 EKKNADQILKPRHKPTPRDLDLMFTSVSTAAVSS-MATVEMEDFSNQQLWVLILLMILGG 503

Query: 236 EAVSS--AYYSESLELPVAE---QPSPSSAYNAESFEQSVGVNQPSAAG 367
           E   S  A +  + E    E   + SPS+  N ESF+     NQ S+ G
Sbjct: 504 EVSISMLALHFNNAETNTNEVLPKRSPSTRRNIESFDAVNDSNQNSSQG 552


>05_05_0080 -
           22243175-22243226,22243342-22243389,22243485-22243540,
           22243752-22243819,22244712-22244773,22245166-22245214,
           22245818-22245899,22245987-22246064,22246441-22246499,
           22246727-22246805,22246946-22247218
          Length = 301

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +2

Query: 2   SAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSL 181
           S+  P+  ++  G     +  QP+ YLN   +  P+G   +V D   A     +A+++ L
Sbjct: 179 SSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLATGGTIVAAIDLL 238

Query: 182 TD 187
            +
Sbjct: 239 VE 240


>12_01_0441 +
           3484003-3484374,3485071-3485151,3485242-3485514,
           3485695-3485826,3485903-3486076,3486164-3486393,
           3486562-3486679,3486717-3486743,3486948-3487079,
           3487189-3487323,3487393-3487599,3487772-3487936
          Length = 681

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 351 NHRQLELNGSWTNTWTIHKVWW 416
           N R   +NGSW   W + K+ W
Sbjct: 361 NRRLAAVNGSWLGAWGLEKLLW 382


>04_04_0827 -
           28457858-28458028,28458513-28458669,28458984-28459083,
           28459204-28459231,28459321-28459396,28461276-28461355,
           28461642-28461805,28461897-28462056,28462154-28462277,
           28462901-28463941,28464141-28464259,28464512-28464823,
           28465222-28465425,28466068-28466751,28467301-28467474
          Length = 1197

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 22/94 (23%), Positives = 41/94 (43%)
 Frame = +2

Query: 107 DGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSAYYSESLELPVA 286
           D + T    S+   A     S +S +  +DI + +    DN+  ++ S+Y + S E   +
Sbjct: 506 DASSTSQESSDKVDALESSESSSSYSSIDDIEDEIDTACDNMPSSMFSSYRASSGEAKCS 565

Query: 287 EQPSPSSAYNAESFEQSVGVNQPSAAGTKRKLDE 388
              +   +Y  E+   S G+N  S     +K D+
Sbjct: 566 SVTTKLLSY--ETCSVSDGINPASPINENKKKDD 597


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,449,966
Number of Sequences: 37544
Number of extensions: 365417
Number of successful extensions: 1068
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)