Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4j21
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82084-2|CAB04976.1| 536|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 30 1.5
AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical... 30 1.9
Z75536-1|CAE17805.1| 195|Caenorhabditis elegans Hypothetical pr... 28 5.9
U70852-10|AAO91718.1| 505|Caenorhabditis elegans Hypothetical p... 28 5.9
U70852-9|ABB51183.1| 784|Caenorhabditis elegans Hypothetical pr... 28 5.9
U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical pr... 28 5.9
AC024880-6|AAF60912.1| 547|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z82084-2|CAB04976.1| 536|Caenorhabditis elegans Hypothetical
protein ZK1053.2 protein.
Length = 536
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 233 GEAVSSAYYSESLELPVAEQPSPSSAYNAESFEQSV 340
GEAV S+ SL LPV E PSS +SF Q++
Sbjct: 92 GEAVKSSQLPSSLYLPVKESSKPSS-NPCDSFRQAI 126
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
protein W06A7.3f protein.
Length = 2488
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 107 DGADTVVSDSETAAASNFLASVNSLTDDN--DIMECLLKTTDNLGEAVSSAYYSESLE-- 274
D D D T+ S + DDN + +E L+TT+ G+A +Y ++E
Sbjct: 760 DPTDPETVDETTSKISENMPKAPDTEDDNATEFIEAGLETTEAFGDAEHVSYLDANIEKL 819
Query: 275 LPVAEQPSP 301
+ +A++P P
Sbjct: 820 VAMADEPLP 828
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
protein W06A7.3c protein.
Length = 2484
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 107 DGADTVVSDSETAAASNFLASVNSLTDDN--DIMECLLKTTDNLGEAVSSAYYSESLE-- 274
D D D T+ S + DDN + +E L+TT+ G+A +Y ++E
Sbjct: 760 DPTDPETVDETTSKISENMPKAPDTEDDNATEFIEAGLETTEAFGDAEHVSYLDANIEKL 819
Query: 275 LPVAEQPSP 301
+ +A++P P
Sbjct: 820 VAMADEPLP 828
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
protein W06A7.3a protein.
Length = 2607
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 107 DGADTVVSDSETAAASNFLASVNSLTDDN--DIMECLLKTTDNLGEAVSSAYYSESLE-- 274
D D D T+ S + DDN + +E L+TT+ G+A +Y ++E
Sbjct: 760 DPTDPETVDETTSKISENMPKAPDTEDDNATEFIEAGLETTEAFGDAEHVSYLDANIEKL 819
Query: 275 LPVAEQPSP 301
+ +A++P P
Sbjct: 820 VAMADEPLP 828
>AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical
protein Y82E9BR.18 protein.
Length = 921
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 382 GRILGRFTKCGGPI*QE*IEA*IQEKHNSKLCN 480
GRIL + TKCG P+ +E I A Q K ++K+ N
Sbjct: 189 GRILAQITKCGNPVTKE-ILARCQVKWDTKIKN 220
>Z75536-1|CAE17805.1| 195|Caenorhabditis elegans Hypothetical
protein F18C12.4 protein.
Length = 195
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 521 VASTQEITHYFTNDFAPYLMRFDDNDY 601
V+++Q+++ F DF P L DNDY
Sbjct: 145 VSTSQKLSETFERDFDPVLEGMSDNDY 171
>U70852-10|AAO91718.1| 505|Caenorhabditis elegans Hypothetical
protein F45E4.7b protein.
Length = 505
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 647 CNNQSRTYGRRTC 609
CNN SR Y RRTC
Sbjct: 492 CNNSSRLYNRRTC 504
>U70852-9|ABB51183.1| 784|Caenorhabditis elegans Hypothetical
protein F45E4.7c protein.
Length = 784
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 647 CNNQSRTYGRRTC 609
CNN SR Y RRTC
Sbjct: 771 CNNSSRLYNRRTC 783
>U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical
protein F45E4.7a protein.
Length = 868
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 647 CNNQSRTYGRRTC 609
CNN SR Y RRTC
Sbjct: 855 CNNSSRLYNRRTC 867
>AC024880-6|AAF60912.1| 547|Caenorhabditis elegans Hypothetical
protein Y97E10AR.4 protein.
Length = 547
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +2
Query: 41 YSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKT 220
YSE D + + ++ ++ + D T + S ASVN +DND+ L+
Sbjct: 455 YSEAFDDKDEQEVIDLDDDDDEPDPNIQQPDDHTESTSKECASVNVKYEDNDVKLSLVSN 514
Query: 221 TDN 229
D+
Sbjct: 515 GDD 517
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,958,236
Number of Sequences: 27780
Number of extensions: 327515
Number of successful extensions: 1099
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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