Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j08
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   2.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.8  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   6.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   6.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   6.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   6.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   6.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   6.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   6.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   6.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   6.3  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   6.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   6.3  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 129 TGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSHVQINMYPGSANTPTNYTS 281
           +G P+  G +  NT+PP SP+ ++    + ++    N+   +   PT  T+
Sbjct: 121 SGKPS--GVISTNTSPP-SPILSNRFGENEEADAASNVISSTPLPPTTSTT 168


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 193 ASGDTGGAVFIQTPP 149
           A  DT G VF++ PP
Sbjct: 16  AEDDTSGPVFVREPP 30


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 48  QLMTPCNTPATPPNFP 95
           Q+ T  + P  PPNFP
Sbjct: 686 QVGTHADLPPVPPNFP 701


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 66  NTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSP 188
           +T   PP     L+  S  + T S      + ++T+PP  P
Sbjct: 117 STNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 66  NTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSP 188
           +T   PP     L+  S  + T S      + ++T+PP  P
Sbjct: 117 STNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 66  NTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSP 188
           +T   PP     L+  S  + T S      + ++T+PP  P
Sbjct: 117 STNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 736 VIHLLCKYK---Q*MMCTLHYYLISCILRKYNNHLQF 635
           +I LLC Y      ++ T+H  L+ CI   Y  HL F
Sbjct: 232 LIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLF 268


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 59  CH*LLSVVRCSNAIGTSGY 3
           CH L++   CS   GT GY
Sbjct: 237 CHDLVNSFSCSCPSGTLGY 255


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 66  NTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSP 188
           +T   PP     L+  S  + T S      + ++T+PP  P
Sbjct: 117 STNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 66  NTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSP 188
           +T   PP     L+  S  + T S      + ++T+PP  P
Sbjct: 117 STNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 66  NTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSP 188
           +T   PP     L+  S  + T S      + ++T+PP  P
Sbjct: 73  STNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 113


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 66  NTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSP 188
           +T   PP     L+  S  + T S      + ++T+PP  P
Sbjct: 117 STNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 66  NTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSP 188
           +T   PP     L+  S  + T S      + ++T+PP  P
Sbjct: 117 STNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 66  NTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSP 188
           +T   PP     L+  S  + T S      + ++T+PP  P
Sbjct: 117 STNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,788
Number of Sequences: 336
Number of extensions: 4149
Number of successful extensions: 22
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)